Protein Info for GFF7375 in Variovorax sp. SCN45

Annotation: Arginine:pyruvate transaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 PF00155: Aminotran_1_2" amino acids 57 to 365 (309 residues), 123.8 bits, see alignment E=9.9e-40 PF01041: DegT_DnrJ_EryC1" amino acids 101 to 221 (121 residues), 33.5 bits, see alignment E=2.9e-12

Best Hits

KEGG orthology group: None (inferred from 94% identity to vpe:Varpa_2383)

Predicted SEED Role

"Arginine:pyruvate transaminase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>GFF7375 Arginine:pyruvate transaminase (Variovorax sp. SCN45)
MLALPATSNEETGMPRHRPARLTHIAGIGVDRMGAIADDADGPPFLRLENLDVDIPPDPE
AVARTVRAASEDADNSYLPFVGQSRLRDVAARHVSALSGVAYSGARNCVISAGGLSGILN
ALLATVEVGDEVLVTDPTYAGLLNRIRLAGGTPKYVPFRFTPGGEWKLDRDALKAAVGPR
VRAMLLMSPSMPTGGYFDEEDWRAIAALCVRHDLTLILDTAMERLLYDGRKVIHPAGLPG
MAERTITVGSSAKELRMIGWRVGWTVAPESYMPDLVAVSLANVVVPVGIAQDAVATALEQ
SPRTLAPYVSELERRRDTVLDELKGLPVGVPAGGWSLLLRTSDFGIDGQTLSERLLKSRV
CATAMQGWGETHGAQYLRFVFSNEPVERLRGLGDKVRAALGA