Protein Info for GFF737 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 27 to 44 (18 residues), see Phobius details amino acids 59 to 77 (19 residues), see Phobius details amino acids 89 to 115 (27 residues), see Phobius details amino acids 121 to 143 (23 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details amino acids 250 to 269 (20 residues), see Phobius details amino acids 303 to 334 (32 residues), see Phobius details PF13593: SBF_like" amino acids 28 to 339 (312 residues), 321.7 bits, see alignment E=5.6e-100 PF01758: SBF" amino acids 71 to 232 (162 residues), 36 bits, see alignment E=6e-13

Best Hits

KEGG orthology group: K14347, solute carrier family 10 (sodium/bile acid cotransporter), member 7 (inferred from 75% identity to xau:Xaut_3906)

Predicted SEED Role

"Sodium/bile acid symporter family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>GFF737 hypothetical protein (Xanthobacter sp. DMC5)
MGTGSGRGEGTSSPRLVTRLMLSRLKLDPFLVALATTVVLALAWPKPGVTGGILHADKAA
TWGVAVIFLLYGVSLSPRRLIESAARWDLHLVVQATTFLVFPAVVVGALALAGGLFPEPL
AIGFFFLAALPSTVSSSVAMTSLARGNVPVAIFNASISSLIGVFATPALMAWYLHAVGGG
MDLGAVILKLVTLVVLPLALGQALRPLLLKTVERHRAFVKAADRVVILAIVYNSFCDSVV
SGVWKGLSPLLLAEVIVAVVGLFAVVYALTRGVCRLMGFSAPDTVAVAFCGSKKSLATGL
PMAHVMFGAAPALSLIITPIMLYHFLQLVIVGVIANRFASRADALAMIDAEEREPSLIAE
DDTLPLPEPARTRA