Protein Info for GFF735 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Large extracellular alpha-helical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1983 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF11974: bMG3" amino acids 531 to 642 (112 residues), 95.3 bits, see alignment 5.9e-31 PF01835: MG2" amino acids 650 to 753 (104 residues), 64.6 bits, see alignment 2.7e-21 PF07703: A2M_BRD" amino acids 1034 to 1217 (184 residues), 74.8 bits, see alignment E=2.7e-24 PF00207: A2M" amino acids 1277 to 1364 (88 residues), 43.5 bits, see alignment (E = 7.2e-15) PF17973: bMG10" amino acids 1841 to 1967 (127 residues), 84.4 bits, see alignment 2.4e-27

Best Hits

KEGG orthology group: K06894, (no description) (inferred from 70% identity to ajs:Ajs_3309)

Predicted SEED Role

"Large extracellular alpha-helical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1983 amino acids)

>GFF735 Large extracellular alpha-helical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MEEALKNNIPLRLAAATAWLAIALPASALQITSVSPQGEVARVRQVVIKFNDSAVNFGDA
KAPAPVSLSCSDAQATRGNGRWTGDREWAFDFENDLPPGVNCTVQVKSGFKSPKGAELAV
TRSSFNTGGPFVQQVRPGPSSRIDEEQHFVLRLNGAATPASLQSHLWCAVEGLGERVPVR
LIEGKDRSELLKANGWDKLADKEPQRYVTLSCNRRFTPDTKVSLVYGKGVATPSGIANTV
EKRFDFQVREALTVGFSCERENAQAACLPIRPMTLNFSAPVPRKQAEGIRLKSAQQTHKP
VFEEENADGDSVVTELTFKPPFAEQAAFTVELPKNFKDDAGRTPANADSFPLPVATGAMP
PLAKFAASPFGIVERFAEPGGTPLLPVTLRNVEAALQVQGLSPGQVNDLQPTTDAEIIAW
FRKLQRYDQFNVSRKLAQADTVGPLPKVLEDRDKRWVESRAVSLLKGQAGVKAMELPRPA
TNDPRPFEVVGIPLTPGFHVVEIASPALGGALLDARYGGTRTMYVRTSALVTNLGVHFKL
GRENALAWVTTLDKGKPAAGARVRVSDCAGKEVATGTTNAQGVVEFKDVPPQAPRCNSGD
GESTQAYFVSARLKDGATEDMAFTWSDWYRGIEPWRFNVPTSRDPRPDARAHTVFDRTLL
RAGETVSMKHLIRTETSQGFGLPETLPDTLVITHTGSGQQFTQPVAWRKTATGGQSAENS
FAVPASAKLGNYEVTLKSADERQRQYSSGEFRVEEFRLPVFEGRIAPQASQALVNVKAVP
TQLQVSYVSGGGAANLPVRVSASVRDKFLSFRDFDGFSFQPPRADGAQGNQDGEEEAAAS
QDQRVIADKLPVTLDRNGAGALTIEQVPTAPQPQELLLEATYADPNGEVQTLRSVSTVWP
ASVVAGIKTEGWVSASQKIKFQALALDLAGKPAAQVALSVKAVAHITTTSRKRMVGGFYT
YDNQTQTKDLGTVCSGQSDARGLLLCETRLGEPGEVELIVTAQDAAGLSIQAASSVWVTR
QGELWFGGENHDRIDLLPEKKNYQPGETAKFQVRMPFRFATALLTVEREGILESQVVQLN
GQDPTVQLKIQEGWGPNVYVSVLALRGRLREVPWYSFFTWGYKAPREWWTSFWHEGREYV
APTALVDLSKPAFRLGLAEIRVGTRAHQLDVSVKADQETYPVRGQAKVTITAKLPNGQPA
ANAEVALAAVDQALLELMPNRSWNLLDAMLQQRAWGVETSTAQMEIIGRRHYGRKAVPAG
GGGGKSGARELLDTLLLWNPKVTLDAKGQAVVTVPLNDALTTFQIVAVADLGTGLFGTGQ
TSVRATQDLQIISGLPPLVREDDQFRAQLTLRNTTQKAMKVAVSPRATLLELAPQTVDIP
AGEAREVAWTVTAPAQLAQTRAEAILWEIEAKDTLGGAKDALKARQRIVPAVPLTVQQAT
LVQVDGAFHLDVNPPAGALPGRGGLKLALQPKLAEGLPGVRDWFANYPFVCLEQKTSKAV
GLRDAKLWQGVVAQLPNYLDADGLASYFPPREGDANRGSDTLTAYLLAATHEASALDPAF
GLPDEVRAPMERGLIAFVEGRISREFWSPRKDLDVRKLAAIEALSRYGKARGRMLGSVTL
APNQWPTGAVIDWVNILQRVSDVPQREQRLAEAMQVLRARLSFQGTKLVFSTEQDDYWWW
LMANGDVNTARLMLTVMNDPAWQDDMGRLASGFIGRQQSGAWHTTTANLWGGLALEKFSA
RFEATPVAGTTRATLGAGSAAVDWAKVERVKTSDALGAPNQTTWFGAPAGPGNLKNNTGF
LPWPADGGKGALSVAHQGSGKPWLTLQSLAAVPLKAPFSAGYTIKKSITPVEQAVSGTHT
RGDVWRVALEINAATDMTWVVVTDPIPGGATILGGGLGRDSQIATSGQKSPTGNAWPAFE
ERSFEAYRSYYEYVPKGVFKMEYTVRLNNVGEFSLPPSRVEAMYAPEVFGETPNARVKVE
AVR