Protein Info for GFF7336 in Variovorax sp. SCN45

Annotation: Alkanesulfonate utilization operon LysR-family regulator Cbl

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 PF00126: HTH_1" amino acids 3 to 63 (61 residues), 56.2 bits, see alignment E=2.8e-19 PF03466: LysR_substrate" amino acids 90 to 293 (204 residues), 147.6 bits, see alignment E=3.5e-47

Best Hits

Swiss-Prot: 54% identical to CYSB_BURCJ: HTH-type transcriptional regulator CysB (cysB) from Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)

KEGG orthology group: K13635, LysR family transcriptional regulator, cys regulon transcriptional activator (inferred from 74% identity to vap:Vapar_0061)

Predicted SEED Role

"Alkanesulfonate utilization operon LysR-family regulator CbI" in subsystem DNA-binding regulatory proteins, strays

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>GFF7336 Alkanesulfonate utilization operon LysR-family regulator Cbl (Variovorax sp. SCN45)
MNFQQLRSVRETVRSGFNLTEAAQTLRASQSGVSRQIRDLEQELGIELFVRSGKRLTGLT
PPGDHLLPIIERVLAESRHLQQAGHIYLAQQQGVLSVAATHSQARYALPRAVQDFRLRFP
GVRLHLHQGSPKQVAQMLQDGEADVGIATEALADHAQLLALPCRCWRHAVIAPVAHPLLQ
EEGPLTLAQLAAWPLITYDNGLTGRSRIDEAFAREGLAPEVVLAAMDADVIKTYVALGMG
VGIVADLACDPERDTHLGALDAGHLFGVNQTKLAVRRGGYLRSYVYAFIECFAPDLPRPV
IELAAAAANDA