Protein Info for GFF73 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Predicted secretion system X protein GspG-like 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details PF07963: N_methyl" amino acids 2 to 25 (24 residues), 33.3 bits, see alignment 1.2e-12 TIGR02532: prepilin-type N-terminal cleavage/methylation domain" amino acids 4 to 25 (22 residues), 31.7 bits, see alignment 4.6e-12

Best Hits

KEGG orthology group: K02456, general secretion pathway protein G (inferred from 57% identity to dar:Daro_3218)

Predicted SEED Role

"Predicted secretion system X protein GspG-like 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (127 amino acids)

>GFF73 Predicted secretion system X protein GspG-like 2 (Hydrogenophaga sp. GW460-11-11-14-LB1)
MRARGFTLIELMVVMAIIATLLTLVTPRYFAHLDRARETALRETLAVTRDAIDKFHADND
RYPATLAELVDKRYLRGLPTDPITQNNDSWTLVPPPGRPGDETAGQTGGVWDIRSGAIEE
GKTYEQW