Protein Info for GFF7278 in Variovorax sp. SCN45

Annotation: Transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 PF13384: HTH_23" amino acids 10 to 38 (29 residues), 24.6 bits, see alignment (E = 1.7e-09) PF22483: Mu-transpos_C_2" amino acids 307 to 377 (71 residues), 65.2 bits, see alignment E=3.5e-22

Best Hits

Swiss-Prot: 50% identical to TRA6_PSEAI: Transposase for insertion sequences IS1326/IS1353 (istA) from Pseudomonas aeruginosa

KEGG orthology group: None (inferred from 94% identity to vap:Vapar_2113)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>GFF7278 Transposase (Variovorax sp. SCN45)
MDMIGKIRRLHARDKLSEREIARRTGLSRNTVSKWLRAPVKEAPKYRREPRPNKLSPFEE
ALKQALTADARRPKHERRTARALHAEIKAAGYDGGYSAVTDFIRAWRQGEGQAVNVTAFV
PLNFELGEAFQFDWSEEGLVVGGIYYRVQVSHLKLCASRAFWLVAYPSQGHEMLFDAHTR
SFAALGGVARRGIYDNMRTAVDKVHKGKGRTVNARFAVMCAHYLYDPDFCNVASGWEKGR
VEKNVQDSRRRIWIEAGQRRFGSFVELNAWLGERCRSLWSEIRHPEHGQFSVVEMLEHER
PHLMPMPEPFDGYVEKPARVSSTCLVSVARNRYSVPCELAGQMVSTRLYQGNVVVVAEDA
AVARHERLSASGGTRYDWQHYIPLVQRKPGALRNGAPFADMPEALQRLRRGLLRQAGGDR
VMAQVLAIVPTAGLDAVIVAVELALESGPPSGRVSVEHVVNVLGRLTAPAAAQSAETALQ
IVTPPLANTARYDSLRGQEVDHA