Protein Info for GFF7274 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 95 to 113 (19 residues), see Phobius details PF02746: MR_MLE_N" amino acids 33 to 129 (97 residues), 62.7 bits, see alignment E=3.8e-21 PF13378: MR_MLE_C" amino acids 158 to 356 (199 residues), 153.4 bits, see alignment E=7.4e-49

Best Hits

KEGG orthology group: None (inferred from 41% identity to pol:Bpro_1862)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>GFF7274 hypothetical protein (Variovorax sp. SCN45)
MKIAAIEVIEAVVPFDDGGSGIGITPGRWDSLEFVLVRVETDTGLIGWGECFAYSCRAAV
ATAARTMVAPLLEGRELPATPEPLNLELQKRLHIFGRYGIAMFAISGFDIALWDIAAQAQ
GKPLHALLGPQVRNEVSAYASLVRYGDPALVKKYCSDAKALGYRFVKLHEIEPAVMRAAR
EACGPEIGISVDVNCAWSPDVARERIPVLQEIDAMWIEEPVFPPEDIFNQAAINREFPVG
AGENACTRYEFARMIDAGAVRFAQPSVIKVGGITEFVGVCAYAAAKGVAVMPHTPYFGPG
YFATLHLLAGLRGEPLFEHLYIRPAADIALGGTPLPVQGTVPIPSSPGVGFAPDPAVLAR
FRLNA