Protein Info for GFF7204 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 78 to 95 (18 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 131 to 149 (19 residues), see Phobius details amino acids 161 to 181 (21 residues), see Phobius details PF03729: DUF308" amino acids 100 to 148 (49 residues), 30.8 bits, see alignment E=1.4e-11

Best Hits

KEGG orthology group: None (inferred from 67% identity to vpe:Varpa_3788)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>GFF7204 no description (Variovorax sp. SCN45)
MSHVTTTATTPRAIWLRNYYFARAAFSFAWVAIALTAAGRSGALAALLLVVYPAWDALAN
MLDARMTGGTGANPTQRLNIWISALVTLAVAGALVSRWEVTLAIFGTWAVVAGILQLATA
IRRRKDNRGQWVMMLSGAQSALAGGFFLSRQGTGMPTLQTLVGYAAIGATYFLLSGLIVL
LRNRRETSRDSSAAA