Protein Info for PS417_03645 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 219 to 237 (19 residues), see Phobius details PF07103: DUF1365" amino acids 5 to 248 (244 residues), 248.6 bits, see alignment E=3.4e-78

Best Hits

KEGG orthology group: K09701, hypothetical protein (inferred from 96% identity to pfs:PFLU0746)

Predicted SEED Role

"Hypothetical protein COG3496"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TZF6 at UniProt or InterPro

Protein Sequence (269 amino acids)

>PS417_03645 hypothetical protein (Pseudomonas simiae WCS417)
MNSALYSGWIAHRRFAPKAHAFRYRIGLLYLDLSEEHEVLGLTPLAGRSRLAPFGFRQQD
YLRELTRTGMSLSDAVRQEVGKALGRTPQGVICLLTQARSWGLAFNPVSFFYCFEADGRL
AAILCEVTNTPWRERYHYVLPAQALNANEHQHFAVAKAFHVSPFLPRDLEYRMSFSPPAA
KLGVHMADWQGELKVFDATLSLQKETLNRTSLHRYLWRFPWMTAKTCLAIYWQALRLLLK
RTPIFSHRAADGASRTAVGYTKDRRHEIP