Protein Info for GFF7133 in Variovorax sp. SCN45

Annotation: Catalase-like heme-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

KEGG orthology group: None (inferred from 80% identity to vpe:Varpa_5934)

Predicted SEED Role

"Catalase (EC 1.11.1.6)" in subsystem Oxidative stress or Photorespiration (oxidative C2 cycle) (EC 1.11.1.6)

MetaCyc Pathways

• reactive oxygen species degradation (4/4 steps found)
• ethanol degradation IV (3/3 steps found)
• superoxide radicals degradation (2/2 steps found)
• methanol oxidation to formaldehyde IV (1/2 steps found)

KEGG Metabolic Maps

• Methane metabolism
• Tryptophan metabolism

Isozymes

Compare fitness of predicted isozymes for: 1.11.1.6

Use Curated BLAST to search for 1.11.1.6

Protein Sequence (361 amino acids)

>GFF7133 Catalase-like heme-binding protein (Variovorax sp. SCN45)
MNTTALSSTTPVRYDPAVETFRDDEAQTQTDLVATLVDMEKTMADHTGHAMRAVHAKSHG
LLRGELRVLDGLPEPLAQGLFASARRYPVVMRLSTPPAEVLDDRVSLPRGMAVKVMGVEG
ARVDGAEGGTTQDFLFVDGPVFAAPDAKGFLRSLKLLAGTTDKAPTAKRVLSGVLQGVEK
AVETFGGQSGTLIALGGHAETHPLGATFFTQVPMRYGAYIAKLQLVPVSPALLALENAPL
DLAGKPDGTREAVADFIRANPAVWELRAQLCVDLERMPVEDASIEWPQALSPFVAVARIT
ADPQEGWSEALAREIDDGMAFNPWHALAAHRPLGNVMRARKAAYAASSDYRSERNGCPLH
R