Protein Info for GFF710 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Nudix hydrolase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF00293: NUDIX" amino acids 46 to 148 (103 residues), 58.7 bits, see alignment E=6.4e-20

Best Hits

KEGG orthology group: None (inferred from 72% identity to aav:Aave_1988)

Predicted SEED Role

"Nudix hydrolase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (186 amino acids)

>GFF710 Nudix hydrolase family protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSTEFRFCPVCATPLALIGMEEDGGFTQRLRCPACGFTHWNNPTPVLAAIVEMDGHILLA
RNAAWPGKMFGLITGFMEAGETPEEGIRREIAEETSLAVDALELVGVHDFQRMNQVIITY
HARAHGEVRLSPELVDYKLMRPEQVRCWRAGTGLALAQWLRQQGHEPVFMEDLPQKPAAG
PADSAG