Protein Info for GFF7082 in Variovorax sp. SCN45

Annotation: TnpA transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 990 transmembrane" amino acids 914 to 932 (19 residues), see Phobius details PF13700: DUF4158" amino acids 6 to 169 (164 residues), 186.1 bits, see alignment E=4.7e-59 PF01526: DDE_Tnp_Tn3" amino acids 581 to 968 (388 residues), 517.7 bits, see alignment E=1.7e-159

Best Hits

Swiss-Prot: 86% identical to TNP7_ECOLX: Transposase for transposon Tn3926 (tnpA) from Escherichia coli

KEGG orthology group: None (inferred from 86% identity to ecv:APECO1_O1R85)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (990 amino acids)

>GFF7082 TnpA transposase (Variovorax sp. SCN45)
MPRRSILSVAERDSLLALPATQDELIRHYTLSETDLSIIRQHRKAANRLGFAVQLCYMRH
PGVTLEIDEEPFAPLLRMVAAQLKVTPECWAEYGQRAETRREHLLELQSNFGFQTFTTRH
YRASIQSLEELALQTDKGIVLASELADGLRRKSILLPSPNVIERICAEAITRANRRIYAA
LTDTLSAVHRQRLDELLKRKEGSKVTWLAWLRQSPIKPNSRHMLEHIERLKAWQALDLPA
GIERQVHQNRLLKIAREGGQMTPADLARFEVQRRYATLVALTIEGMATVTDEIIDLHDRI
IGKLFNKAKNKHQQQFQASGKAINDKVRLYGRVGQALLEAKQSGSDPFAAIESVLSWDAF
TASVGEAQKLAQPAQFDFLHRIGENYATLRRYAPQFLEVLKLRAAPAAKGVLDAIDVLRG
MNADNARKVPVGAPTAFVKPRWARLVLTDEGIDRRYYELCALSELKNALRSGDVWVQGSR
QFKDFEDYLVPAGKFAEMKLASQLPLAVATDCDQYLHERLSLLEQQLATVNRLAAANELP
DAIITITSGLKVTPLDAAVPDAAQALIDQAAALLPHVKITELLMEVDEWTGFTRHFTHLK
TGDTAQDKTLLLTTLLADGINLGLAKMAESCPGTTYARLSWLQAWHIRDETYSSALGELV
NAQLRQPFAGNWGDGTTSSSDGQRFKAGGRAESTGHINPKYGSDPGRMFYTHISDQYAPF
SAKVVNVGVRDSTYVLDGLLYHESDLAVEEHYTDTAGFTDHVFGLMHLLGFRFAPRIRDL
GDTKLFIPKGDASYDALAPMISSDRLNIRHIRAHWEDILRLATSIKQGTVTASLMLRKLG
SYPRQNGLAIALRELGRIERTLFILDWLQSVELRRRVQVGLNKGEARNALARAVFFYRLG
EIRDRSFEQQRYRASGLNLITAAIVLWNTVYLERAINALRGHATPVDDALLQYLSPLGWE
HINLTGDYLWKSSAKVGAGKFRPLRPLRPP