Protein Info for GFF708 in Variovorax sp. SCN45

Annotation: Oxidoreductase, GMC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 PF00732: GMC_oxred_N" amino acids 6 to 302 (297 residues), 113.1 bits, see alignment E=4.4e-36 PF01266: DAO" amino acids 6 to 272 (267 residues), 36.4 bits, see alignment E=1.2e-12 PF13450: NAD_binding_8" amino acids 9 to 46 (38 residues), 22.9 bits, see alignment 2.1e-08 PF05199: GMC_oxred_C" amino acids 371 to 556 (186 residues), 116.6 bits, see alignment E=3.5e-37

Best Hits

KEGG orthology group: None (inferred from 73% identity to bcj:BCAL1185)

Predicted SEED Role

"Choline dehydrogenase (EC 1.1.99.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (EC 1.1.99.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.99.1

Use Curated BLAST to search for 1.1.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>GFF708 Oxidoreductase, GMC family (Variovorax sp. SCN45)
MAQPIDYLILGGGTAGCALAARLSEDAGKRVVLVEAGRDLRPDAMSDSIRSRYPGLAYLD
KQNIWTALVATVSGAPTRQPNRTPRGYEQGRVLGGGSAINAMVANRGAPDDYDEWARLGA
EGWSGEVALKYFRKLERDCDFDDAYHGRGGPVPVRRLAPERVSPFVQAVCRSLRMRGHPQ
YPDQNGEWKDGVFPAAIATSDDGQRVPASIVYLTPEVRARKNLRIVTDTHVQRLLFEGAR
VTGAEAGGQPMHAAHTIVCMGGIHSAALLMRSGIGPAADLRALGIEVKADRPGVGMNLME
HPLTAVSTYLPPASRMKDLAEHHDQALLRYTSKSIPNAPAGDMHVAIIGRTAWHAIGQRM
GTMLIWVNKSYSRGTVKLRSADPLEEPVVDFRLLSDPRDLARLKEGFGVAARALGDANLD
GVRGPVFPTSYSERVRKVSAPGAWNAFQMGALSFILDWAGPLRGAIVHGLITLGVRIDDL
LNDDAKLTEFIGNGVAGVWHASGTCKMGAGDDPTAVTDGAGRVYGVEGLRVCDSSIMPSI
PRANTNMPTLMLTERIADLIKAEAREGAVAV