Protein Info for GFF7072 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 5881 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 5205 to 5227 (23 residues), see Phobius details amino acids 5237 to 5270 (34 residues), see Phobius details amino acids 5282 to 5304 (23 residues), see Phobius details TIGR01643: YD repeat (two copies)" amino acids 166 to 202 (37 residues), 19 bits, see alignment (E = 7.5e-08) amino acids 2119 to 2152 (34 residues), 25.4 bits, see alignment (E = 7.3e-10) amino acids 2581 to 2610 (30 residues), 20.9 bits, see alignment (E = 2e-08) amino acids 2637 to 2675 (39 residues), 16.2 bits, see alignment (E = 6.1e-07) amino acids 2924 to 2955 (32 residues), 16.5 bits, see alignment (E = 4.8e-07) amino acids 3054 to 3084 (31 residues), 20.4 bits, see alignment (E = 2.9e-08) amino acids 3374 to 3414 (41 residues), 24.2 bits, see alignment (E = 1.8e-09) amino acids 3772 to 3802 (31 residues), 16.1 bits, see alignment (E = 6.4e-07) amino acids 4558 to 4597 (40 residues), 25.1 bits, see alignment (E = 8.9e-10) amino acids 4621 to 4656 (36 residues), 17.1 bits, see alignment (E = 3e-07) amino acids 4676 to 4715 (40 residues), 24.2 bits, see alignment (E = 1.7e-09) PF05593: RHS_repeat" amino acids 166 to 198 (33 residues), 24.5 bits, see alignment (E = 5.7e-09) amino acids 2119 to 2156 (38 residues), 32.4 bits, see alignment (E = 1.9e-11) amino acids 2201 to 2229 (29 residues), 26.5 bits, see alignment (E = 1.3e-09) amino acids 2407 to 2443 (37 residues), 23.6 bits, see alignment (E = 1.1e-08) amino acids 2491 to 2527 (37 residues), 32.5 bits, see alignment (E = 1.7e-11) amino acids 2581 to 2616 (36 residues), 32.3 bits, see alignment (E = 2e-11) amino acids 2637 to 2672 (36 residues), 24.8 bits, see alignment (E = 4.8e-09) amino acids 3374 to 3407 (34 residues), 27.1 bits, see alignment (E = 8.5e-10) amino acids 3772 to 3805 (34 residues), 28.4 bits, see alignment (E = 3.4e-10) amino acids 4558 to 4594 (37 residues), 30.4 bits, see alignment (E = 8.2e-11) amino acids 4676 to 4711 (36 residues), 31.3 bits, see alignment (E = 4.1e-11) PF16640: Big_3_5" amino acids 799 to 879 (81 residues), 39.6 bits, see alignment (E = 1.3e-13) amino acids 1267 to 1347 (81 residues), 52.1 bits, see alignment (E = 1.7e-17) amino acids 1373 to 1457 (85 residues), 38.3 bits, see alignment (E = 3.2e-13) amino acids 1468 to 1540 (73 residues), 37.7 bits, see alignment (E = 4.9e-13) amino acids 1674 to 1763 (90 residues), 46.1 bits, see alignment (E = 1.3e-15) amino acids 1788 to 1862 (75 residues), 45.2 bits, see alignment (E = 2.2e-15) PF18885: DUF5648" amino acids 3862 to 3944 (83 residues), 37.7 bits, see alignment (E = 4.8e-13) PF01476: LysM" amino acids 5117 to 5163 (47 residues), 24.2 bits, see alignment (E = 5.4e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (5881 amino acids)

>GFF7072 hypothetical protein (Variovorax sp. SCN45)
MVAIVSGNSLGLSLSSLAVLGQRGLSGSAGQGRSGEQAYINAATGNLVLQNRDEFIQGRG
PDILSLRTYNSQGLLDDPNANRWNVGAFGQKVTLMGTVASVDSSLMRTDRDGAQAVYTWD
GASSRYASTAGAGAFDTIAYDESAAQFVWTDGDTGLTERYQSTGPGRLLRATDADGNTVS
YAYNVSGTVQSLTDANGEVTYYDYSGNQLTQIRSVDVGGKGLTRVRYGYDGGGRLSTVTA
DLSPEDGNIADGRTYVTAYTYDGASSRVASVAQSDGTTLAFTYVHHEGAYKVASVTDSLG
AVTRFSYDTAQGATTVTDPLGAQSVYSYDAQGQLLELRQGVTASHPRGASQVSYSYDAFG
NVKDASDGEGYRVDFIYDQRGNLSAEYDSDRGYRSREYGEQNQLLSETTHVEGPPGTSGS
SSETVRYMYAQDNPRRLRFVIGAQGNVTEYRYDAYGQRVVAIEYREGTYDYYAVLEASRR
IPDEAQMVAWQQAQDLTKTRRTDYVHDGRGALSSSTVYAEVGADGQGIAASAAMTRYIYD
ARGLLLQKIEPGDAASTTTYTYDGLGRVLSASGPSLDGGVTPNTTITSYDDAGGKATISI
ASGLVTTSTYDRAGRLVSVTQQSAGAGVLGTTSYAYDKSGNLLMTQDPTGARKWMLYDEA
NRKIADIDGTGAVIEYAYNSNGTLRQTIAYGQRIDTAVLVDGVGLPTTAWSPTNTTTSLA
ALRPASRPEDQKVWNFYDGANRLAFQVDGSGYVTQTVYDSASRVLSTTKLANPVDVRLLE
AKNGPRELGNVAVTLRADAGPVPVRTAVTMTASVADVSSNGMVTFFSGDIALGSAPVIGG
IATFVSDELPSGVNSIRASYTNGAQKLASVSSVAQVTVTPARTSAQLALSSSRIASGDAV
VLSMALIHERPLGLPGATGEVRFYGNDALIGTASVIDGLAMLKAPIFPVGSVSVRAVYAG
DSTHETVSAETKITVEKAATRTTLQVSRQDALLRLKATVMGSGESALLPQGAVVFYDGDT
LIGRAALRDGIATLDVASPVGGKASYRVEYTGDAHHVQSARHADPFVTLEASAKSTVQGG
PITLNMEVIGKSAGGRAGFFADSLYLGTAEVVDGRATLVTNYLPVGSHVLLSASLQNDGN
GADAAVVQGPAVEVVVGSQEVRPPSVQSLLIDQIGRAVVGELIGIKLTVPRVPDPSASDF
LIFDGKTLIGRGQAGYGDWVMLPSLSFGTHDLTLVYDGELAQGRVSTATVQVVVERAQVR
IDLASSTQPQAAVRGSPVTFSARVRAAGDSRPTGEVTFYRDGVAMGTADVVDGMAKLERN
EPILGIHSITASYSGDDSHEPSGNTVASAQSALIQKVVASANAKQTRTDLSILPATIIAK
QSFSLAVYIREGDTQAPVVRGTVRFYEGTRLLGIGTVDYGSAYLPVAGLAAGVHQLRAVL
IGDDTYAASETSLKVSVPKISSYVYLDTEATSLMQGQPVTLTAQVRGGVVPASGRMNFFA
DTQFVGSAAVVDGLASLTTSNLPVGSNIILSASYGGDDVYLTGLGIQKLWEPGKATIRTI
QVLPGGQSLEPATTRTMSFVSPNYSGAAGQPLDVDLNIGSNNGFKNGNFAVFQGQTLIGS
YALDPASPGRIRIEGLQPGHSELTVVYTDGTNAPAAVATTQAYIGKARPDLAELTSSRQM
SVEGQPLTFFVKIRNSDGSEVYDPPMTGTVTIFGSSGTLGTTALRGGWGGAYATLTVSDL
PAGSYSFGVRYSGDANYEAHTYTPWNEEFRQQIAMAPAASSMRMEHWTYGSSLNVQVHLQ
GQGVPDSGTVSFYDGNTLLNRSNVYDGRSHLSAGGLKVGDHVIRAVYSGDANNAGSESST
VVSIAPVGAAHTTLANRSEASISQDGALNVDLYGARAGSLVSFYQGADSLGTALTINGRA
TLIGARLPPGNQRITAVYAGDADTAGSILTFMQSVKGAAGGAAPQLKYDAAQDRTVSRLY
GHDGRLQGLLDGEGYLTEYKYNAAGEIVETIRRAERSVTEVDRATAVADARASRSLAGLR
RGDSADDIHTYNFYDARGRLVGQVDGEGYLNETVYDARGNITQTIRYANKAGAIGGSSTL
QSIRPVADNARDHRTVQAWSAANQLLSRTNAEGTVTRFTYDSIGQLVQTTTAVGTADERT
SRRRYDIQGRLAGELDGRGSDAVELSDPLSLWAANGLTHTYDAAGRRASTTDANGRRTLF
FYDAVGRLAYTVNDLGEVAESRYSAHGQLSEQVVYGTPVDVVTLATATPGGLNTDTLIRL
LEGVADDVKDTRVLTRYNATGTKASSTSAVGDITDYSYNAFREATSSSFTLKDGYRVTDT
ASFDRRGLLVESTKDRGLVVEGKTYDAFGRETGRIDGKKNPSLLTYDRLGRTVTVTDALR
SERVTTYDAFDRVLTQRDTLGHVTLYSYDQANRGMTVTTPEGVRMTTLRNRQGQIHSVSD
GRGNTTTHSYDKSGNLLRTEAPEGIATASTYDKAGFALSSTDANGVVTDYAYDAANRLLT
RTVDAAGLRLVTAYGYDAKGQKISVKDPRGVVTTTEFNRGGQAVRQVVDPEGLALATSYE
YDTTGKVLKVTDPNGVVKQYSYDGAGRRVKEVLDPNDPLVPLDYKTGPLNLVRSYTYDGN
GNVVKALDANGNATNYAYDANNRMAYTLDALGNVSRNVYDSEGRVARTIRYAAPVERDKL
PDLPDAIDIASRVVADPATDMVEERRYDRDGRLHFTVDGTGAVIEYKYDTSNNVVETRSY
ARRIDLATWEPNSDPAVVADDGDSRVRTVYDGFNRAVWKVDGAGGVSSNSYDDNGNITEV
RTYANALTRASFEAWDGRSAPAVMADDTRDQRVRTVFDAANRAVSQVDGVGGVVRTAYDS
NGNTLERRAYANRLEASALAAWDGKNLLLPKEDGKSDQHVRNIYDAAGRLTWSVDGEGAV
TSNEYDANGNVTYRTRFAEVIGRDASPDSVKEDFRDQVTRYIYDAANRVSYRSKWQGRSA
TGGGYGSPFGSREEISYDYDGVGRLLRQTVHAALPQVAPTGRVDEADRTSYFVYDAAGRL
AYSVDAEGGVTRNSYDGAGRLVRTLQAANSIWNLPYFAAFPEARRDLPLDRTLTSAPYFR
RGRGDFLRLSAAMLEAKLTTDASADRITVMAYDGAGRRTLTIDAMGGVTNNAYDAFGNLT
QQVGYAIRIAPPEWSPGINRTAFDPAGLKKSEADRISYFAYDQAQRRVLTVDALGAVTET
AHDGIGQAIKTRSYARAIDATGLSNVAAPSALRSRITSDATADRVSRQVFDASGRVIYGV
DALGYVSKTHYDGVGRVRGTTQYARPILQGTEGPAVAAAIAISPDDRSKSFEVDTLGRVV
LSVDAMNGTESWTYDSRGNKTSYTNAKNAVWTYEYDGMGRMTAEISPQVDLTRVRKGSKD
RLEVDEYRSGTNQVVTSMEYDALGNMTSRTEAWGRPEARRTRYAYDGLGRQIWVEFQEKR
PIEPMSSQMGYEGGDLRTLTTYDAFGNAIANVDVSGHRSYKTYDSLGRVVHEIDALGYVT
GYQRNVFGEVTALTRHAQGIDLDAGHWPEGSEPSAKMVAAVLRPGDADRIIVTSRDRLGR
AIEVKEPSVSFHDSSAAFGARYGFDGKSIRNTYDGFGNLVQVARRLNSDSWVLAATNYHD
LRGQQVATVDALGYLTTQVFDAAGNVVDRVEYAKALPGWIGTSNLAAWTGLADARTDRTP
PAPTVDMSSDRRTATTYDRNNRKTSETRVHVEHSTAANGTSERGNLTTSYGYDAVGNLTR
TTDAAGASTYSYYDALERVTAVAEPTRAGSDGATFVTPLTVFRRDAHGNVVTKTEYINGA
GVEDQPANPRPMPALLVGPNPEVARAQASGWQLNGNIGYMSATPFDGGEAVYRVRTDFFG
PLHYYTQSVEKRDELVASGLWHDEGIIGYIASQQQEKTVPLYKVQLRLPPFWPRELQPFS
AYYLLTTSKDEVDDLVQKSGATPQGIVGYVGDARDSQFDTGLVRMFNPLVGDHFFLPDTV
QMDPYEDAELVSSTDRTSYAQYDLLGRVVQSTDAMGVNHYNNYNDRGQLTEEWQYVRGGD
KTQQRLFRRHEYDALGRQVRVIEPGTASDNATYTEGRARADGVYAANPKVTLMLGVPESV
NPNAPGQESANGKVVVQMANIVKANGGAVKVEFDFVTPETAAPDDGSVPPKMNPGEPATF
SQVFDQASGAGLSHGVKLTPTDPIGTVSTIRILQQDAAGKWVLLWQGTPTEANGEAYLNI
TGAERQVETVMDYNAFGEMVSKRVNGQAGEYFDYDRAGRLWRTNAGDGVDKIAQYDLLGR
QTSEVRSAGSGRGNLDLGSLSSAAQANQLSDLRRTDTAYDLLGRVTSQALAERAPQDSPW
ALQRPVINQNVDRWGNVVSISDPRSTGWITHYRYNANNQLTTQIQTDRDGNSGVDAYGNI
VNSNAAVTRIYYDAMGRQVAVRDANERINGQEWDAGGNLVRELHADGNGVSTGVVSHAYD
AFGNKVRTIDAEGKRKRFLSDKFNRSLKTVHEAVAVYQGASLEVVPQGSREVVETNTWDA
AGRKTSQTNGNGDTIRYAYDPRGNLIRTTLAEGEVTRAAYDARNRKIIEMDGNGALATWK
YDYFGRLQGRSDIGGATYSYSYDNARQLTRQTSTNSSNVVTFPGTSNPTQDLSYQYDGAG
QLLQVHDASLGKTSRYSYDLAGRRVRETTEQAGVSYQDNSIAYDALGRMRWVSDSGGRAT
VEIEHDKVGNRTRIHTRVNDPATGVGADNDRYFAYDAMNRQTLVDSASADGSALGPDGHR
LAYDYNGNRTKDTSTGTHLALVDGQWSSVEGETTEEYTYDRMNRLSTVTRDGVKVDERLY
DGASRVVASGVVTSTTHSVGLAFDYAVAHMAANGAPYYALAGGAIDGRINTYNKNGQLLG
QNRYEYGIKRDSTIYDNGAHNLDALGFEKGSVIGYDKAGNLLGYFSGYLVPGSTSFTHAI
NNVGRADGYRTDSTWVRNGTVGTANSANAEGRGFHTFDANGQTAATGDSNFQLLGKDNRI
FVNDANGTTLYTRYMGGQAQRQLVVNGEVLGRYGLSVNEQVLVSPPNLPRVFAPQASFGF
GYRPIDEGHPAATPGSYAVREGDTLQGIAKSVYGDSSLWYLLAEANGVASGSELQRGQVL
IVPTHVSSANNASTFKPYDPSKIIGDTSPALMAMPGGGGKEGCGGFGQVIVAVVAVVVAA
VTQQWYLTSVLNVSGGIAGAISSGAYGSLAVSGAIGGIAGSVASQGVGIAIGAQESFSWK
GVALGALGGAISAGLGATGLGSAVAKATTPLVGRIVTQALSNAATQGIAVVTGLQDKFNW
RSVAASAASAGVSQALNAAMDYNPLNGFEIEKSLASGLGGSLVVQAVRGGKISAAALASD
AFGNVLGDAITTANGLRSKALDDQAAADARSGRTQNLAQLRAWAGGYSGDGVGVGDRGTD
TAPVRPFLMNGETVNSSTASMFPTPQIVSSGPSYVLYDNTAETRGIAPQGVGNVIGNVDV
SGTGTITPYQGIGANLIETFSTGLSLSEKWKMASGQIKYAYRGSNLAQGAVQILGGGLEV
WGATTLSATGVGAIVGVPMALHGGDNIGTGLNRMLGLGDGTTLTYQGTYALTGSSTAASF
VDQGISFAGGVASLASSMRSAWTITAADKAAGLRYEAAQALALLDNAGSSIFISGAASVG
RLPAAWGKTPHATEFLYTSNRTVPLSIESALNQADEFGALRGSLVDYKIRPNGSVTVDHG
GGLFINYRAVSDEAFDAFHGSNRLAAYRTPQEFLQNKLISWSDAFEGGVVNVHIRQSTLL
SDRASVAALGHEYGELQTVFGRVGNGSYTIGKWDSFINGAHEQVVPKVDRIIGNMIIGGG
R