Protein Info for GFF698 in Pseudomonas sp. DMC3

Annotation: Chromosome partition protein Smc

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1162 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1153 (1152 residues), 1198.9 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1146 (1144 residues), 226.5 bits, see alignment E=6.9e-71 PF13175: AAA_15" amino acids 3 to 267 (265 residues), 37 bits, see alignment E=8.3e-13 PF13476: AAA_23" amino acids 6 to 230 (225 residues), 73.2 bits, see alignment E=1.2e-23 PF13304: AAA_21" amino acids 26 to 222 (197 residues), 34.6 bits, see alignment E=5.7e-12 PF06470: SMC_hinge" amino acids 524 to 614 (91 residues), 36.2 bits, see alignment 1.8e-12

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 96% identity to pfo:Pfl01_1799)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1162 amino acids)

>GFF698 Chromosome partition protein Smc (Pseudomonas sp. DMC3)
VRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES
MTDVIFNGSTSRKPVSQASIELVFDNSDGTLLGEYAAYAEISIRRKVTRDSQTTYYLNGT
KCRRRDITDIFLGTGLGPRSYSIIEQGMISKLIESKPEDLRNFIEEAAGISKYKERRRET
ENRIRRTHENLARLTDLREELERQLERLHRQAEAAKKYQELKAEERQLKAQLSALRWQDL
NEQVGQRESIIGNQEVSFEALVAEQRNADAAIERLRDGHHDLSERFNLVQGRFYSVGGDI
ARVEQSIQHGQQRLRQLQDDLKEAERARLETESHLGHDRTLLLTLGEELDMLTPEQEVTS
AAAEEAAAALEEAETTMHGWQEQWDAFNLTAAEPRRQAEVQQSRIQQLESSMERLADRQK
RLAEERALLSADPEDAAIMALNEQLAESEATLEDLQTSEEAQVEKLEQLRQELQQALTAQ
QQAQGDLQRLNGRLASLEALQQAALDPGTGTAEWLKEHNLAERPRLAEGLKVEAGWELAV
ETVLGADLQAVLVDDFSGFDLSGFTQGDLRLLSPASDGVRVAGSLLDKVEAQIDLSPWLG
QVKPVDSLEQALALRGQLSAGQSLISRDGYWVGRHFLRVRRASEAESGMLARGQEIEDLQ
LEREEREATVEAMETRLQTLRAQQRQQENGREHLRRLLQDEARQQGELKAQLSAGKAKAE
QLTLRRTRLDEELVELAEQRELEHEQVGEARMQLQEALDTMALDTEQRELLLAQRDSLRE
RLDRVRQEARQHKDHAHQLAVRLGSLRAQHDSTRQALERLEMQAERLTEKREQLSLNLEE
GEAPLEELRLKLEELLDKRMTVDEELKTAQIALEDADRELRDAEKRRTQAEQQSQLIRGQ
LEQQRMEWQALTVRRKALQDQLLEDGYDLNGVLATLTAQASEREAEEELERINARIQRLG
AINLAAIDEYTQQSERKRYLDAQDADLVEALETLENVIRKIDKETRNRFKDTFDQINGGL
QALFPKVFGGGRAYLELTGEDLLDTGVTIMAQPPGKKNSTIHLLSGGEKALTALALVFAI
FKLNPAPFCMLDEVDAPLDDANVGRYARLVKEMSQTVQFIYITHNKIAMEMAEQLMGVTM
HEPGCSRLVAVDVEEAMAMVDA