Protein Info for GFF6976 in Variovorax sp. SCN45

Annotation: Nodulin-related protein CC_0717

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 51 to 73 (23 residues), see Phobius details amino acids 152 to 172 (21 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details PF01988: VIT1" amino acids 21 to 229 (209 residues), 223 bits, see alignment E=2e-70

Best Hits

KEGG orthology group: None (inferred from 78% identity to dac:Daci_2712)

Predicted SEED Role

"Mlr6622 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>GFF6976 Nodulin-related protein CC_0717 (Variovorax sp. SCN45)
MKSLHYRAHAERHRTEHIGWLRAAVLGANDGIISTASLVVGVTAAHASHEAIVTTAIAGL
VAGAMSMAAGEFVSVHSQADTEKADLERERIELATEPDAEHRELTAIYVRRGLEYKLAQQ
VAAQLMAHDALGAHARDELGISETLSARPLQAALASAASFAVGAALPLAVVACAPSDALL
PWTICTATAFLALLGAAAARIGSAPVARSVWRVAFWGTLAMGITAGVGTLFGVQA