Protein Info for GFF6968 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 PF00899: ThiF" amino acids 156 to 229 (74 residues), 41.2 bits, see alignment E=1.1e-14 PF14464: Prok-JAB" amino acids 400 to 522 (123 residues), 28.4 bits, see alignment E=1.3e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (532 amino acids)

>GFF6968 no description (Variovorax sp. SCN45)
VSLRLPPVVHGRIEEDPPTLGLLAEMLSARGVDLVAALELAISTSVGSNGAAAATDSTGT
VILLDMPITRALDVPAERCARRAYLVNHGELKLGEMMGELHRVGDKYWRVKLLEPVAKSE
AWTMVEIEAIEVLQCVDQAAARRQAGTVGSGPMATLVGAGALGATMLDLWVRSGWGEWTA
VDKDHIKPHNLVRHPADLRHLGHYKEQVVAARAKEIRDGAAVVTPVHADACDLVDGGLLP
ALSSGRLVVDASTTLEYPRLASAHDDAGRHVSVFLTPSGSGCALLLEDAARTTRLRSLEA
QYYRAVIAQDWGEHHLQGSAGTFWSGASCRDISVVMPYSSVQVHAALLAEQVQKLVTSDG
ACVRVWSRETDTGTVVIHELSVHQEHRIAFDDMDLFIDAGVTAKMCAMREHHLPNETGGI
LLGYHDLNINAIVVVDALEAPSDSRSSPGHFERGVEGVASAGREASRRTAGIVGYVGECH
SDPKGHGADPSADDFYQLVYLALGMAQDGLPAVSLIAGDKGDLRAMKAAVGS