Protein Info for GFF696 in Variovorax sp. SCN45

Annotation: Glycosyl transferase, group 2 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 42 to 66 (25 residues), see Phobius details amino acids 361 to 379 (19 residues), see Phobius details amino acids 385 to 410 (26 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 85 to 328 (244 residues), 62.6 bits, see alignment E=1e-20 PF00535: Glycos_transf_2" amino acids 87 to 267 (181 residues), 54.5 bits, see alignment E=2.8e-18 PF13506: Glyco_transf_21" amino acids 164 to 290 (127 residues), 30.4 bits, see alignment E=5.4e-11 PF13632: Glyco_trans_2_3" amino acids 180 to 378 (199 residues), 79.8 bits, see alignment E=5.1e-26

Best Hits

KEGG orthology group: None (inferred from 88% identity to vpe:Varpa_2435)

Predicted SEED Role

"Glycosyl transferase, group 2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (476 amino acids)

>GFF696 Glycosyl transferase, group 2 family (Variovorax sp. SCN45)
VAASPRLSPPATPLRSWLIHGGVLVLWGLLFAMAFRVGNVGAWSVGVAYVLYDTVLLLFV
GWMTLPILRPRPPSQSTGTHRRTTLGVIVASHNECAVLPVTLAALLGQTDVPDRIVIADD
GSSDGTAELLTTRYGLVAPALGELSAASATHPALYWLRLPHGGKAVALNAAILCIDTDTV
LTVDGDTLLDSKAIAAVRRAFSDEPNLVAATGVITPVCSRTLAGRCFQWFQTYEYIRNFL
SRYAWMRVNGLLLISGAFAGFRTDAVRAVGGFDTDCLVEDYELIHRLHRHAQAHGLPWTV
RVLGDAQAHTDAPSSTGAFLRQRRRWFGGFLQTQYWYRAMVGDRRYGWLGIAMLPVKAID
TLQPLYGLAAFGLLLMYLVRGNFGVLAPVAGVIGAKIVLDLLFHLWSVFLYRRWIGQQSE
ANMAQAFLAALVEPFTFQILRHTGAAWGWWTFLTGRGTWGRQTRVGLVDADGVRRS