Protein Info for GFF6942 in Variovorax sp. SCN45

Annotation: Universal stress protein UspA and related nucleotide-binding proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 PF00582: Usp" amino acids 162 to 284 (123 residues), 32 bits, see alignment E=8.5e-12

Best Hits

Predicted SEED Role

"Universal stress protein UspA and related nucleotide-binding proteins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (285 amino acids)

>GFF6942 Universal stress protein UspA and related nucleotide-binding proteins (Variovorax sp. SCN45)
MTLSTISVHLDHTECCEVRTRLAARLAMLHGSHLMGIVPTGVPASTGIGPVPRVAGSEDR
VDHAIAEVSLCLRRRAETVAHVFHSRMKPTALSCEARLMDGDPLHAVVHLGRASDLIVVG
QADSAAAVCEAVRRLPEEILLNAGRPVLVVPSTGHRIPWGLDRVLVAWDGSREASMSLLG
AMSLLRSATHVTLLALHREAAANSWRAPDPEDLSGWLLRHGIQASVERLATSLRISDALM
DRADALGSDLLVMGGYGHARAREQLLGGVTREVLAQAAVPLLMAH