Protein Info for GFF6929 in Variovorax sp. SCN45

Annotation: GENE II AND X PROTEINS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 60 (20 residues), see Phobius details amino acids 82 to 108 (27 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details PF20398: DUF6691" amino acids 2 to 136 (135 residues), 206.4 bits, see alignment E=1.1e-65

Best Hits

Swiss-Prot: 49% identical to Y1893_XYLFT: UPF0394 membrane protein PD_1893 (PD_1893) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K07112, (no description) (inferred from 80% identity to mpt:Mpe_A2717)

Predicted SEED Role

"GENE II AND X PROTEINS"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (140 amino acids)

>GFF6929 GENE II AND X PROTEINS (Variovorax sp. SCN45)
MIALASLLAGLVFGLGLIVSGMANPAKVLGFLDLAGHWDPSLAFVMAGAIAVGSVAFLAA
RRRSKSLLGAAMRLPSARGIDRRLVVGSVVFGVGWGIAGFCPGPGLVALGMGEAKALVFV
LAMLAGMGIFELIEHRGRQP