Protein Info for GFF6928 in Variovorax sp. SCN45

Annotation: Putative transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 144 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 52 to 75 (24 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details

Best Hits

Swiss-Prot: 51% identical to Y1892_XYLFT: UPF0394 membrane protein PD_1892 (PD_1892) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K07112, (no description) (inferred from 77% identity to pol:Bpro_4846)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (144 amino acids)

>GFF6928 Putative transmembrane protein (Variovorax sp. SCN45)
MSIDWSHFTPLASLAGGVLIGIAAAMFVLLNGRIAGISGVLGGLLRPSRGDIGWRVAFVL
GLVGAPSLYLLFTVLPRPQIDAGYGTLVLAGLLVGLGTRYGSGCTSGHGVCGLSRLSPRS
LVATLSFMGAGFATVFVARHLPGI