Protein Info for GFF6923 in Variovorax sp. SCN45

Annotation: Acetate permease ActP (cation/acetate symporter)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 41 to 65 (25 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 115 to 133 (19 residues), see Phobius details amino acids 159 to 180 (22 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 221 to 241 (21 residues), see Phobius details amino acids 288 to 311 (24 residues), see Phobius details amino acids 329 to 350 (22 residues), see Phobius details amino acids 382 to 409 (28 residues), see Phobius details amino acids 431 to 450 (20 residues), see Phobius details amino acids 456 to 479 (24 residues), see Phobius details amino acids 487 to 510 (24 residues), see Phobius details amino acids 522 to 546 (25 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 74 to 495 (422 residues), 193.8 bits, see alignment E=2.6e-61 PF00474: SSF" amino acids 74 to 495 (422 residues), 384.3 bits, see alignment E=3.6e-119

Best Hits

KEGG orthology group: K14393, cation/acetate symporter (inferred from 84% identity to eba:ebA3537)

Predicted SEED Role

"Acetate permease ActP (cation/acetate symporter)" in subsystem Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (578 amino acids)

>GFF6923 Acetate permease ActP (cation/acetate symporter) (Variovorax sp. SCN45)
MSLRSSTILRARSAAVFCALSALGAAALAAGADLGQLQKQATNWTAIGMFGLFVVATLFI
TKWAAARTRSASDFYTAGGGITGFQNGLAIAGDYMSAASFLGISAAVMASGYDGLIYSIG
FLVGWPVITFLMAERLRNLGKFTFADVAAFRFRQTPVRIFAASGTLVVVAFYLIAQMVGA
GQLIKLLFGLEYWVAVVIVGSLMMVYVLFGGMTATTWVQIIKAGLLLGGASFMAISVLWH
FGFSPEAMFAGAVKVKTDLALKDGKTAEVAAGIGQSIMGPGNFVKDPISAISFGMALMFG
TAGLPHILMRFFTVPSAKEARKSVMWATGWIGYFYLLTFIIGFGAITFVLTNPDFLDAKG
LLKGGGNMAAIHLANAVGGNVFLGFISAVAFATILAVVAGLTLSGASAVSHDLYATVIRK
GDAGSAAELRVSRITTLALGALAVLLGIVFEKQNIAFMVSLAFAIAASANFPVLFMSVLW
KGCTTRGAVIGGFLGLISSVVLTVVSPSVWEATLGHPAGSSLFPYTSPCLFSMSIAFVGI
WLFSVLDRSARAQVDRGGFLAQQVRSETGIGAHGPIGH