Protein Info for GFF6893 in Variovorax sp. SCN45

Annotation: Phenazine biosynthesis protein PhzF like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 TIGR00654: phenazine biosynthesis protein, PhzF family" amino acids 7 to 217 (211 residues), 153.9 bits, see alignment E=3e-49 PF02567: PhzC-PhzF" amino acids 12 to 306 (295 residues), 188.6 bits, see alignment E=9.1e-60

Best Hits

KEGG orthology group: K06998, (no description) (inferred from 92% identity to vpe:Varpa_0761)

Predicted SEED Role

"Phenazine biosynthesis protein PhzF like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>GFF6893 Phenazine biosynthesis protein PhzF like (Variovorax sp. SCN45)
MNLMKSRPFKQVDVFTATAYRGNPLAVVIDGNGLDDATMQRFAQWTNLSETTFLLPPTEP
TADYRVRIFTPGGELPFAGHPTIGSCHAWLQAGGKPKAPGMVVQQCGAGLVPLRREGERL
AFAAPPLKRSAPSPALLAKVAGALGLKAQQIIAAQVLDNGPVWFGLLVNDADAVLALTPD
HRALKELGVKAGVAGVPAAVDVSPLIGRSNREARAFGNRPAAEYNDGAKIDLEVRAFAEP
IGVQEDPVTGSLNASLAEWLIADGHMPERYLAAQGQCLGRAGRVYIERDAEGRIWVGGDA
VTCIDGQVTL