Protein Info for GFF6852 in Variovorax sp. SCN45
Annotation: Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (4558 amino acids)
>GFF6852 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system (Variovorax sp. SCN45) MQRSSTVSRRNPDSSSSFFFPQARLTPLVHAIALMLAAGATAQSAQAQQAFSSAWMAQKN MAQGTALATGRLPNGMPASMLTSPQAQQQRANEQLQRSIGNLNIAARGIAAQQAAQEAAR RAALEGGQGVPDGLAEGGLKVDTASLTAGWANANAPVQTQAGGRTQVTVTQTDAQAILNW ETFNVGKNTTLKFEQQPSWAVLNRVNDPAAKPSQIRGQIQADGTVMVVNRNGIVFSGSSQ VDTRNLVASAVGMTDAQFKRGIYSQALGSGFVPTLANDLNVTASASSNGKATGDVVVEAG ARIATRAPQSVTEGGGYVLLAGRETHNRGTIVTPGGQTTLAAGDSFVIRKGLGTDSNQQS STRGNEVTPARVADSTAGRVSNAGLIQALTGDITLTGHTVEQSGVLLSSTSVNTRGTLHL NAGGSADARVTLAPGSVNAVLLDSSSATALDVQRDALIKDSALVSDGAYNRRDQSLVQIA SSGNVEFQADSMTLATGGQVNVNAVRRIQVADRASIDVAGAVGVSVAMASNNIEINVQGN EQRDAPGNRDSKNLNNANLWIDRRYLVRVPAGTNGYATDRWYTGGGLLEVGGYLSTGGHG IGEWAASGGTVAFGGGEVVTQAGSAINVSGGTIDVQTGMLKQSWLVGKDGRLYNLATAPG DMLYSGVYRGFENPHERWGKNTTEYFYNPLIGARERLENGYTMGRDAGRVIVGTKSAVLE GDIEATVFQGDRQRNAPDAALDGYRQSQTAAPRAGRLVIGQLQPVFNPDTGLLRDNPGAQ LERIDIGAVQRIAQDLRLEDAMPEDRQGRLRIDAGWLNGLHLGGFTAYAKGGITVDADVA VGNGGRIALHATQVDVNANLSARGGSIVLGDMVGRLLPGSNTSWAEQPIAATPPEGYTRR VDVAAGVVLDTRGLWTNLRNNPGDIGGLPYMNGGSVTIGSSGDVRLHGGTLIDTSSGAAL MADGTLQGGRGGDITLRSNQSDVTGLGAGALLLEGELRGHGVKGGGTLTIDTGIGVALGG GLLANPGLLQAGESVPVHLTLAEAFTIPAGTVLPQDFSYVTNVVAPGEAMKIMPVFSATR PYTLPAAWVVPAPSVPWEYVFVYSKAGSVYMNGSTVPAGTELVNITGTMAPGYVVPAAAF PKGMPVADYTATVAAGTPFAHDVLLAEGSLLLAGNRLPASVAVKPLLVLDNSVFQSGFSR YSVSAQQGVQVANGANIDVTMPLLRADMAAARATSTGADPSAVLQRWLPPLWQEAPLKGV LTQRAGADLALGAGSVYRQAPVVVGEGATLSVDPGRSLTLTGNAQITVDGTLNAWSGRIG LLPGSFGTGNDADRANGTPDATSIWIGSKAVLDVAGRADTAIDSQGRVYGHVGDGGSIEI GAAYSANAGMVNPADAFVVVRPGARLEASGAAARLDLPGRGTVEVAGDGGVISLASYRGL FLDGSMRAAAGGAGAAGGTLALALETPNYGVVDKLSLKGINVDDAVRVPRELVLAQVQGD SGLSADLKVGNREDALAYGRARIGVDRIAQGGFDNLSLLANGLVSFDGNVDLRMGQSLGL TASAFGLALNAAPAAQVRLAAPYIRVAGTTRLQDDNYIMPNPVRGSKNGGSGGGTLGLPL VDDGAHLQLDAQLIDIAGLVNTGTRGSIVQNAGDPLKVERLAFGQITMRSGGDLRLSQAM QFYTPGSLTLAASQIYPAMNDSGAFTVGERGVVDQYGTLNREFDPARSLNIERIDPSAPL PAQPYSAFGKLSFASAVVNQGGVVRAPLGEITLGASGAQWPTGEVNLLPGSVTSVSAKGL AMPYGGTLDGLSYLQDGKDVVFKGVGNDPVITLAAHAVNVREGAVLDLSGGGELTGTAFL GGRGGSTDARLNPLVQTIARGTFTLPGLATNPVYAIVPGTQAGYAPLVNEHGAGDPALGR QITIGAGVPGLPPGTYTLLPSTFALLPGAFRVELNGLAPGLPPSNTTIAMRNGSYAADAQ LGVVNTGIRNALPTQVFLTPADVLRSYSQYNETSYADFAIAQAERNGVPRPLLERDAKML RFDLALPTRGGALHPAGSTPALSFAGLADFSAAAGSYGGSALVDGRFSGSIEVLGDGASP TPGFKGVSVAASALNAIAAPRLGIGGLPSVTYVDYTGSSQRANIAGFNYAAGSIVLREGA VLKAGEVYLVTNVKTGSIVVEQGAGINTLGRGKAAWDSRDGFVFAPGIFSVVAVSNGWLD LLAPAFSGASDNGPGRIDIGACNSAPLCRGVTQLYSEGTIAASTDQSFELRDTARYGTRN LVLSVGGINAGSEAALADAAARQVLPPGLTLNQGILDRLLRGDTSAGAPALENLVLTARD AINFYDSVELSTIDPATGRSSLERLVLTAPAFYGAGNADALARIHTGTLVWNGSITPPGL TAAGGAGTGSGRLQIDADRIEFGYGPGSRPDTIHSMDRLILGFGEVAFNASERITANHTG SLAVYQSRGAWDDAIKGYAYSGGNLRLQTPLLTGQAGSVNKIKAGGDIVVAAPAGGAAPA LSGKALADALGAEIGLDAAGNLTLDSRIALPSGKLTASAQRDLQLADGAQLDLAGRKIDF FDVAKYSWGGDVMLESRAGNVRQSAGSRIDLSADHNRGGKLTVLALAEGAGNIELRGAIE GGASGQYDAGGTLVPYAAGGADIRGQRIDDFAGLNRRLSEGGVFGSRSFQLKQGDLTVGD ELKAREINLSVDGGRLAVNGTVDASGDQAGSIRLAARDGVTIGGAAVLDAHSRVLRVDSY GQPIEAPNRASIEIDSGSGRLVLQDGARMDVRAGTNGNAQSLGTIELSARRIGGERGNDI AIDAGGKLQIDGARAITVNGFWSYNDAASGTDPSADGRPYQVVNQAYLDSKHADSVAFMG NVLANGNLMNNRLAGLRAYSDAFHLRPGVAIVSATPDGDLHVDGDIDLSGYRYASVNPRT QRTGVYGSGEAGALVLRAGGNLQVYGSITDGFDTSVLPATPSDQGWVLVKGHVPWGGDVV IPRGNLVELAEGTFFQSGRTLNYDLPMKAMTLKAGTVLAAPAELSRNLVLSVGTVLGGAV RDAAGNVLYAAGTVLSQSVTLQAGMKLDAGNRLPGDAGVKAMTWPAGVPLPFPSGTVSDN FDGLGRVNGVVLAGSLKLAKGAIIPAETLVVLPGDATSVNLRPADADGNQGRNLALAPML APGSQSWSMRLVAGADTQAADTRALRPRDAHGQLILADTHYGMGSALVFTAPTPGTEGVY YWIGNSRDVIGYAPGVAVDLDEWGGEEAVQDINNWGYGNLVTWAPLGSRPKAEAMPATQQ LFSVLRTGTGDLDLLAGGNFTMNSLYGVYTAGTQSAGVGAAYNSPRSRIDGTVLGADGVD YEPFVDGGARSLYRAWYPEHGGNVLLRAQGDVRGDLIGAPLSSRRDAIGSLHSSGASVDV GNWLWRQGTGSAVAGSEGLPAAWWINFGSYVPGSTTSGDLFASTPSLLGFIGIGTLGGGN LVLEAGGNAGMLTQRSDRGINYAPRSTGLNLVVASTGRVSADGRQLALTGGGDLDVRIGG GLNPVAELRSVPDTNSDTPQTNYIGNRSDLNSNFVNLRGALRIEAGSVGGIELRFDKADP EESRAYQVYTATSSVAGGGPVLVPGDSGVRIDTRGDLVLGGVGDPGRVSLRSGGTPFAAN GTQFEGEGYSWFSLWTPGSAIDLFSAGGNLTPHNSTTESLSRGNSQATDGRFVMPSVLRA VAAGGSIYYGNSATGVIDGSNKPVQSPIGLMLAPSPVGPLFAKAGTGQLELLASDSIYAG GYSVTQSGADPTALPNPLNPGFSGTVEQVWYGARRLSNVNPDALAPSVFLDLSDADEGYQ RYPLFSLTPPTASGYAAQGQPPARFYASEGDVIGVRTGAIITRGRGGIGNLPTWYEGGGP VALRAGRDIVNSGNGLGKSELMPQEGLGWTTEPYNGDPSAPPKPIALTQGSARGNLIVHN NPDDVSVVQAGRDVRYSTFYVAGPGLLEVTAGRDVYMADRAELKSIGPVANITPGDRSSG AGIAVAAGVGRNGPDFAAFAARYLDAANLAASGQALAEQPGKAVTTYGDRLTLSGWLGEQ FGYGGDEAGAPAYLAGKQAEIDSAHKQSAGAPSRDLRREYALGSQLHLVNWLEERFGDGK RNGLGLRFDAASMDARAFFAALPAEQQRAFLRPVYYAELKAAGREYNAVGGPREGSYLRG REAIATLFPTKDAQGNAIDYQGDLTMFSSALYYDDIKGTNIVTVTTRPRAGVKYMTQQEW IAAGRENYKTAHYEVQDAGLHTDFGGDIRLMVPGGRTLVGVDGGFVPGEGSGVLTQGAGE IEIFSNGSILLGQSRIFTTFGGNVLAWSAQGDINAGRGSKSTVVYTPQRRAYDGIGLVSL SPNTPNTGAGIATLNPIPEIPPGDVDLIAPLGTIDAGEAGIRVSGNVNLAALHVVNAENI QVQGKSVGIPVIAAVNVGALTNASAAASQAAGAAQEVLQRERAAQRQALPSVFTVRVLGF GNEAPEGGASNGGGGARERGVTGAAYDPKGVVQVLGAGALTTAQMQSLTPGEQRALKQ