Protein Info for GFF6830 in Variovorax sp. SCN45

Annotation: penicillin amidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 806 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF01804: Penicil_amidase" amino acids 40 to 794 (755 residues), 404.3 bits, see alignment E=8.2e-125

Best Hits

KEGG orthology group: K07116, (no description) (inferred from 89% identity to vpe:Varpa_2408)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (806 amino acids)

>GFF6830 penicillin amidase family protein (Variovorax sp. SCN45)
MTSKNATPSRFSLTALSAVSLGLAALLASCASTPPPGGRSVTIERTTFGIAHITAPDYEG
LAYGSAYAHAQDNVCQTAEHLLTLRGDRSQFLGPQNTGDLGLGRAPNAQIDLFIRYHMDD
AALARAGATTSPDVQAALRGYVAGYNRYLQDAGQNGGQGLPAECRGKPWVRPMTAADLSR
ATEMSMIQGGLGALAGAVLAAVPPAPGARTSAAPVELKEAVAEIGRHSFNANPEGGELGS
NGWAFGRNATPDGKGLLLGNPHFPWTGTNRFWEMHLTIPGKVDVMGATGGLSPVVAIGFN
KDVAWTHTVSTGKRFTLYELKLDPNDPTVYFVDGQPKKMVARTVVLPATATGGGTAPLQH
TFYSTDWGPVISLPRAGLGWTAQKAYAIRDANTLNVRSAESWMKMAQARNVTELRAAMGN
QGMPWINTIAADRDGNAMYADLSVVPDVSADMLKSCAPSPAAAALLNAAGLPVLDGSRSA
CAWNRDSTAAAPGIIAPARMPVLITPDYVQNSNDSFWLSNPDTAAMAGVSPLVGPMGVPQ
RLRTRSAIMEIRGRLAGSDGLPGNRMGAAELRSVIFRDKNLAGMLVMDDLQAACSAAGGS
LSTDQALGCRVLSAWDRTSNADSKGAPLFREFWRKTKDLPKVWRVPFDPAQPVATPAGLD
MATPATREAVFKALGDAVGILRTAGFAADVPLGVPQSRLVRGQKIALHGGDEFEGVLNKL
ESQGQSLIDPKGYNVNYGSSYMQVVTFDANGPVAQGLLTYGQSSDLASPRAYDQLPLFAA
KQWHPLPFHPADVRAQREGTPLQLAY