Protein Info for GFF6775 in Variovorax sp. SCN45

Annotation: ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 31 to 54 (24 residues), see Phobius details amino acids 77 to 105 (29 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 165 to 190 (26 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 98 to 294 (197 residues), 48.5 bits, see alignment E=4.6e-17

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 91% identity to vap:Vapar_3686)

Predicted SEED Role

"sugar ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>GFF6775 ABC transporter, permease protein (Variovorax sp. SCN45)
MSSTVTASNPAAATTAAPVANPGARHARWQFWGAVMVVPYLLVFVVFVLYPVGYGLWLAR
HPQSYVKLVEDPIFFRSVINTVVFLIVAINVKMLVALVLSGFFVISRWWIKIVAAIFILP
WAMPSIPTILSFRFMLNPEWGVINTTIFRLTGADGPNWLNDPTLALGFAMVVHIWKSLPF
WTLILVAGRLAIPGEQYEAASVDGASSWQKFRFVSWPALKTLYITSLILSMIWTLGDFNS
VYLLTGGGPADLTHVLATLGIRYLRLDQVDLSMASIVVALPLILPLVYFMMKRLSK