Protein Info for GFF6758 in Variovorax sp. SCN45

Annotation: Lactoylglutathione lyase (EC 4.4.1.5)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 TIGR00068: lactoylglutathione lyase" amino acids 2 to 130 (129 residues), 213.9 bits, see alignment E=3.4e-68 PF00903: Glyoxalase" amino acids 2 to 124 (123 residues), 95.3 bits, see alignment E=5.3e-31 PF13669: Glyoxalase_4" amino acids 5 to 110 (106 residues), 29.6 bits, see alignment E=1.1e-10 PF18029: Glyoxalase_6" amino acids 8 to 124 (117 residues), 23.9 bits, see alignment E=8.5e-09

Best Hits

Swiss-Prot: 81% identical to LGUL_ECOLI: Lactoylglutathione lyase (gloA) from Escherichia coli (strain K12)

KEGG orthology group: K01759, lactoylglutathione lyase [EC: 4.4.1.5] (inferred from 85% identity to adk:Alide2_2959)

MetaCyc: 81% identical to lactoylglutathione lyase (Escherichia coli K-12 substr. MG1655)
Lactoylglutathione lyase. [EC: 4.4.1.5]

Predicted SEED Role

"Lactoylglutathione lyase (EC 4.4.1.5)" in subsystem Glutathione: Non-redox reactions or Methylglyoxal Metabolism (EC 4.4.1.5)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.4.1.5

Use Curated BLAST to search for 4.4.1.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (149 amino acids)

>GFF6758 Lactoylglutathione lyase (EC 4.4.1.5) (Variovorax sp. SCN45)
MRLLHTMLRVGNLQRSIDFYTKVLGMNLLRTSENPEYKYSLAFIGYGNGNPDQAEIELTY
NWGTESYELGTAYGHIALGVPDAYAACEKIKAAGGNVTREAGPVKGGTTVIAFVTDPDGY
KIELIQAKSASYDDRRQSDAKITDPLRSA