Protein Info for GFF6744 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 44 to 64 (21 residues), see Phobius details amino acids 85 to 111 (27 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 168 to 199 (32 residues), see Phobius details amino acids 206 to 223 (18 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details PF02517: Rce1-like" amino acids 132 to 218 (87 residues), 90.1 bits, see alignment E=4.8e-30

Best Hits

KEGG orthology group: K07052, (no description) (inferred from 76% identity to vap:Vapar_1223)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>GFF6744 hypothetical protein (Variovorax sp. SCN45)
MPSPKSTAFPSAAQAALLFLALCLCEIVVGAALRDANRWLGLNGMQIGVLSAVLGNGCVF
AAVMHAQQLTWRDLFHQSRASARVTLLLVVPPVLLLVPALLLTITSAFNLLVRIAPLSAW
EEAMFSRMADGSVAAVLAVCVVAPLLEEMLFRGIVLRGFLQRYPRWQAIFLSALLFGAAH
MNIYQFVVGFVMGTVLAWLYERTRSLIPCIALHAAYNSATLLFADWLDAASPARLLWVAL
LALTAAVCGTLVLRLMLVARPARRTSA