Protein Info for PS417_03420 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1432 PF11725: AvrE_T3Es" amino acids 217 to 1404 (1188 residues), 522.7 bits, see alignment E=1e-160

Best Hits

KEGG orthology group: None (inferred from 80% identity to pfs:PFLU0708)

Predicted SEED Role

"Type III effector protein AvrE1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U6L8 at UniProt or InterPro

Protein Sequence (1432 amino acids)

>PS417_03420 hypothetical protein (Pseudomonas simiae WCS417)
MRTELKALFKLQNDLVERLKRPGQELSPPVLLHYQPLHPTSMQFDVSLNDGKVQADTTLT
GRDIAHHLNQPNKHYVADGPSTAGTHTLRMKDEHQHVFHIHSTPAVAAVFKSSLPDATGG
VVESPGRAHLGSVSAVQTTVDGQQFRLDGDRLFRFEPLTLSWMHDADARAFSRIGLTNEG
QLLKTPKGVADSSAHGRTTVQLNQAREASLVHVQGGSVQAVQPVDELGAPVQLARIGLSG
NALYGATTDGELVQADLRIARDQQLPMVRQPLESLERALKGAVSVEGFFHDDAGQLNAQV
RDARQQLHSVPLGDANTLRPQWNLSDVLVKGIEKGLPLPSQHALAAAVDLGQRGKVALDA
GNLLTWDAAAQRWQDTVQPGVEHLERGLDGRAYVLQEGQLKAVAISQVRDPLMEGASHDL
AALPAPRPQVSLDEVLAGDSQRRITGFAVADGRNFVTVDQTNQLQVHHDGDAQPLHASPA
IDIKTLALDHVGNLYAHTQGGELFRLNREAWQGTTAGVQHWSSVELPGRQPLESLRMDAD
KHLIGGWNKQLYRLDNASASALEWGPMQSTTPAPSLADTLASTQLRAQFPGGALSVGSNV
MGQTREGVPLKRQYSQGISAHFHPLEALSQKAKGVQQHFNGRKGLEGIYADDRRLHQQLT
PLAQSRPVSAELDLRLTALSEPGPRQALAGQIRQALTQVEESSQSSARRLGDAHGVTFDP
RPTLNRAEINPGSTLHQLYEAFKRVSPSSEKTTAALLANFEGQGVTLPTAKPGGKRDLDH
PSALIEGDLIHHASTLKQLADLVQALDATSGHSPSALARLEKSLADVMQAFQDSPVHTLA
SQGIASYAQAESLYGNFKLLAKDLGTPGSALHWHLSGLLGLPKDASIKDAMTQQVQQLSS
GQTLSPSRTQGKSLGLMVTGIKPIAPVEFFLGVSKSHTHGVSISRTDKGARVEISSDDMR
RLAGSVGSGVTLGKGSGAVGPGLRVAAELTAAVAKNQGASIAFDVKEADFGKMMSILTGE
TGSVYDLLALGEEHAAGKSSKVSGDVNVDALAQLRLMYSPQEDIAELDSVIRAGVGGVAN
LNLFHTDKSQSATRTATGTRHNAATSAQFLRQGGVGANIAPLNALALVSAESGGPSAAVF
ALPELSVMVKFDRGESQAFSFSFKHPQPVTQSQVDDLKRSVSLYSPTFRQDLAAIELSGN
TVDQQLASVQRFLATHPPIATKPDAYHAISQSLNGLMVQQDLVKQGLRQLASVESSVTRV
GLRDDGRHTWLDDVAPANKAAIEQWLRDDPQFAQVLDQLQHGEGTSVTLGMELKPEILRA
IERSHLAGESSEPLIRRALSDRTNLRVKHMSLSYTATQSHGMSIPAMTNLSFSSSAGLSH
TQKRVNADLEYGLDADKPLRMNLNDTLGSRPGNDLTIDLGDLRVRTPSLARR