Protein Info for GFF6726 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13531: SBP_bac_11" amino acids 45 to 280 (236 residues), 54.8 bits, see alignment E=2.4e-18 PF13519: VWA_2" amino acids 342 to 468 (127 residues), 40.9 bits, see alignment E=5.7e-14 PF00092: VWA" amino acids 342 to 511 (170 residues), 39.6 bits, see alignment E=1.3e-13 PF13768: VWA_3" amino acids 343 to 514 (172 residues), 26.5 bits, see alignment E=1.2e-09

Best Hits

KEGG orthology group: K07114, uncharacterized protein (inferred from 64% identity to del:DelCs14_5771)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (534 amino acids)

>GFF6726 hypothetical protein (Variovorax sp. SCN45)
VSLWSRRLALAFVAALSLGLAACGKDDSQGTAGSGSPVADTAAFTILAGSELKDIEGPIV
DAAKAAGVEVKFSYAGTLDIVERINAGERFDAILPPNGAYPALALQSKPVARDKLFYSRI
ALGVKNAKAAQLGWNRKPPGWAEIAKAAGSGQLRYGMTNATSSNTGMSALFAVASALAGK
TEDLTAQDVDEKTLKAFLSGQKLTAGSSGWLADAYVKDPSAIDAMVNYEAVILRANEKLP
KADQLALIYPRDGMISADYPLMLLNDRKRDAYTQLVGALKAAPFQRDALSAAFLRPANPE
VPAAGALPTAAVAELGFPNRLEVIDAVLGTYQSQWRKPATSIFVLDLSGSMQGARLESMR
EALKLLSGADGASTAAATASTRYSAFQSRERVVLITFATQVQAPVWVRFEADKIDAARAE
LRQRADAMKADGGTAIYSALAAAEDLARQEQQNDPGRFVSIVLLTDGENNSGLRPNEFRD
RYAAGGLPARIFPILFGEGNVDEMRQIAQLSGGREFDGRKLRLAQVFKEIRGYQ