Protein Info for GFF6717 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 746 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF08857: ParBc_2" amino acids 444 to 657 (214 residues), 116 bits, see alignment E=9.4e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (746 amino acids)

>GFF6717 hypothetical protein (Variovorax sp. SCN45)
MTKNKWTRARVAGLAGLAAISLAACGGGGGGGGGTFFPASGPSAGNGGNNNQAAPAAVAL
QPLVGGSQYSGTASFGDTVSIALDQPATGKLTLRFVDSRFGLAGSVSASYATQADGSLLA
SNFAAVAGTGVPDALVAALPKLSLRFQLDGSLLSGSLAQVPNLKAGNGAVLQGEIAASNQ
GVADVARLAGVYNFIKLTSAYNAKGMVQGAPASDFGQLSIKADGSVRACMGQAYADSCSS
GQAGLLAAEDDQKTYPGALALTLGGQRIGRVMVNAQSGAATLLADEFTSAADGSFRTGTW
VLQSAPSALAATALDGEWLCSQPELDAATGALTGRTQRNFVSIGANLLQTDTIDNDVKLS
VNAGIGGSATSTVSGMNGLVAGQWVDSQKIGRVLLPVGKQTAYYIGSGASTGVAATHISG
VCRALPVQPVINTYAAAAVNVPMTIRIGDAHPTQPAIGYDQVYYKQARYRNNKNGSTEWK
KEFADFCEAAGLSDSKGSTVIAGTSKLTDTTTFTCSGKTVDQTAMKSAVVGPRGVLYLTD
GHHTLTSFWDAPDGGGAEVNIPVVMKGNFMSLSNAAFWREMRKSKKVWLKLPDGRAITPA
ELPQQLGLNNGLQDDPYRALLYFTRGLGYDQPTVSTDPANLTPSPEFLEFYWAEWLQANP
QNLKLSAYNLTNSDSYMQAIGAASDLMNRADPNTIIGSSGLTATAMGQRPMPYAPADLAA
LYVSADPLKPGKLAYALSYRASLAAK