Protein Info for GFF6659 in Variovorax sp. SCN45

Annotation: Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details amino acids 395 to 419 (25 residues), see Phobius details amino acids 437 to 459 (23 residues), see Phobius details amino acids 471 to 494 (24 residues), see Phobius details amino acids 538 to 558 (21 residues), see Phobius details amino acids 866 to 884 (19 residues), see Phobius details amino acids 903 to 930 (28 residues), see Phobius details amino acids 966 to 985 (20 residues), see Phobius details amino acids 997 to 1021 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1021 (1016 residues), 1012.6 bits, see alignment E=0

Best Hits

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1038 amino acids)

>GFF6659 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type) (Variovorax sp. SCN45)
MSPSRPFILRPVATSLLMVAIVLAGLVAFRFLPLSALPQVDYPTIQVQTLYPGGSPEVMS
NTVTAPLERQFGQMSGLDRMSSTSAAGVSIITLQFSLGQTLDVAEQEVQAAINAGGSLLP
ADLPAPPVYAKVNPADAPVLTLSITSDTLPLTEVQNLVNTRLAQKISQVSGVGLVSLSGG
QRPAVRIQANTQALATNGIGLDTLRTAIAAANSNGAKGSFDGPKRAYTINSNDQLLTVDD
YKNLIVSYKNGAPIRMVDVAQVVNSAENTQLSAWAGSKTESGTKLIPAIIMNVQRQPGAN
VIATVDAIKAQLPELQAGLPTGLNISVLSDRTAGIRASVEHVEMELVLAVVLVVLVIFAF
LGSLRATVIASIAVPISLIGTFGLMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENIAR
YIEEGEKPLQAAFKGATQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAVTLAITIL
ISAVVSLTLVPMMSARWLKHEPKRDTGGSGFGARAQRFFDGVMVRYDRSLHWVIDHQPLT
LLVALLTMVLTVVLYLTIPKGLFPTQDTGQLQARIQAAQDVSFDRMSQLQQEAAHAILED
PEVENLSSFVGVDAANNTMLHTGSMLINLKKGHGDQQKIMDRLREHVHGVAGVTLYLQPT
QDLTIDAETGPTEYRVSLEGVDSAAITAWMKKLVARLQDSDKVRNVSSDAGAQGLAAFVN
VNRDTAARLSITASTVDDALYSAFGQRIVSTIFTETNQYRVILEAMPGMVNTPQTLGQLS
LIAGSGTATPLSAIANISEQQAPLQITHVAQYPASTLNFDTAPGVSLGSSVDAIRAAAKE
IGLPSSITMTFLGASGAYEKSLSNQLWLILAAVVCVYIVLGVLYESYVHPLTILSTLPSA
GVGALLALMITGNDLGVIGIIGIILLIGIVKKNAIMMIDFAIDAERNQGKSAREAIHQAA
LLRFRPILMTTLAALFAAVPLMLSFGDGAELRRPLGLAIFGGLIVSQLLTLFTTPVIYLA
FDRLGGGTTRRMVEEEAV