Protein Info for GFF665 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 89 to 116 (28 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 183 to 199 (17 residues), see Phobius details amino acids 205 to 223 (19 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details amino acids 364 to 382 (19 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details amino acids 416 to 437 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>GFF665 hypothetical protein (Variovorax sp. SCN45)
MRMTRLSLGRFLPWPLYFLALLVGALSIRDIPSDPSLFTTIGNLAQVTNLSDPKTYAVAA
LDVHRFGWVSEVNAWILSLWPPGLILLEAGIVGLFGIDAPLVLVLQVLACACLAWMLALQ
RAVLVPFVGNVVASALPLLLFLFPMPRIFLLHPYGVVLGEAFSVAFFLSAGLLLILGAQS
RRLSTAMLAGLCFALAAYFRSQYESILMATTGLAVPVLAWCLWRRARQNGLAERASYATT
AKVIVVSLLVAHAVMLPWRVHNYAVARNFAWVQTGNVIFLNGLSSDEALIKRGGGFVVEG
AGNLACKVEPKYCDRTEKELFLKAFLSHPFAWYRAKFAAAGEYWNTFSFSRHRFTTWFHV
QDDLGSLVYFICLIAVPLLLVLTRRYQWWDLMAWSVASLYAASFVIFTLAHFESRYFYLL
KIFAFVWSANMSAMVWGMRKKGKPQTAPQCTSPTPC