Protein Info for GFF6615 in Variovorax sp. SCN45

Annotation: putative plasmid stabilization protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 675 PF02195: ParBc" amino acids 26 to 120 (95 residues), 51.8 bits, see alignment E=3.8e-18

Best Hits

KEGG orthology group: K03497, chromosome partitioning protein, ParB family (inferred from 82% identity to ajs:Ajs_2943)

Predicted SEED Role

"putative plasmid stabilization protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (675 amino acids)

>GFF6615 putative plasmid stabilization protein (Variovorax sp. SCN45)
MNAVTHTEAQALHTVTPAQPSQDMRLVPLSQLRPSRRNVRKTAGPSVDALAASIARVGLL
QNLTVILAADGEHYEVVAGGRRLAALKLLAKKHRIAKDWQVPCLLVADGTARTASLTENI
QRTSMHPADQFEAFAALVAEGRPIEDIAADLAVTPLVVRRRLKLANVSPRLMADYRADAV
TLDQLMALAVTDDPAMQDAAFYDAPQWQRSPSALRERLTEREIDAYRHPLARFVGLDAYE
AAGGGIRRDLFAEDDAGVYLDDAALLERLAQDKLAGIATEVRAERWAWVDVTPAMTHADL
QAFQRAPRERREPNKREAQRIEKLQARMQAIGEAVDAAMEEDDEDKAEALQEEGERLGEQ
LQALEDGLLHYSAGVKEASGAIVTIDRNGEAVIHRGLLREAEAKALRTLEKLRRGFGNAE
GEDEGGEGEDTDDTTKAYVSDRLAQRLSAHRTAALQIEVARHPQVALAALVHGMVQTVLQ
GSHYGPSRNSLPLGVRLTVQDRLEGMAPDWPESPAAVALRELQEAWGGKLPEDGAALFAA
LLAMEQGELVQLLAVCVAATVDVVTPRATRKQPGEELAQAVGLDMAAWWKPTAEGYFKHV
SKAVTLQAVGEFAPESVNRLAKLKKADIASEAERLAEGTGWMPAIFKEEGPQDAEPDGTE
ASATVAHEQAEALAA