Protein Info for GFF6562 in Variovorax sp. SCN45

Annotation: T1SS secreted agglutinin RTX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 6000 6500 6778 PF22783: BapA_N" amino acids 1 to 122 (122 residues), 88.1 bits, see alignment (E = 2.1e-28) PF17936: Big_6" amino acids 161 to 238 (78 residues), 68.1 bits, see alignment (E = 3.5e-22) amino acids 375 to 443 (69 residues), 31.9 bits, see alignment (E = 7e-11) amino acids 586 to 654 (69 residues), 30.9 bits, see alignment (E = 1.5e-10) amino acids 794 to 861 (68 residues), 33.2 bits, see alignment (E = 2.8e-11) amino acids 1108 to 1178 (71 residues), 31.5 bits, see alignment (E = 9.7e-11) amino acids 1317 to 1382 (66 residues), 34.5 bits, see alignment (E = 1.1e-11) amino acids 1419 to 1485 (67 residues), 29.1 bits, see alignment (E = 5.2e-10) amino acids 1940 to 2009 (70 residues), 29.6 bits, see alignment (E = 3.7e-10) amino acids 2151 to 2216 (66 residues), 32.8 bits, see alignment (E = 3.8e-11) amino acids 2565 to 2632 (68 residues), 29.7 bits, see alignment (E = 3.4e-10) amino acids 2985 to 3051 (67 residues), 32.2 bits, see alignment (E = 5.9e-11) amino acids 3609 to 3679 (71 residues), 29.6 bits, see alignment (E = 3.7e-10) amino acids 3820 to 3886 (67 residues), 30.9 bits, see alignment (E = 1.5e-10) amino acids 3921 to 3988 (68 residues), 28.9 bits, see alignment (E = 6.2e-10) amino acids 4976 to 5040 (65 residues), 30.2 bits, see alignment (E = 2.3e-10) PF19077: Big_13" amino acids 370 to 451 (82 residues), 62.3 bits, see alignment (E = 3e-20) amino acids 480 to 554 (75 residues), 45.5 bits, see alignment (E = 5.1e-15) amino acids 570 to 663 (94 residues), 36.8 bits, see alignment (E = 2.6e-12) amino acids 674 to 768 (95 residues), 57 bits, see alignment (E = 1.3e-18) amino acids 781 to 868 (88 residues), 50.7 bits, see alignment (E = 1.2e-16) amino acids 891 to 972 (82 residues), 51.8 bits, see alignment (E = 5.7e-17) amino acids 1001 to 1077 (77 residues), 46.4 bits, see alignment (E = 2.6e-15) amino acids 1092 to 1185 (94 residues), 38.8 bits, see alignment (E = 6.1e-13) amino acids 1211 to 1290 (80 residues), 55.1 bits, see alignment (E = 5.1e-18) amino acids 1308 to 1389 (82 residues), 52 bits, see alignment (E = 4.8e-17) amino acids 1416 to 1494 (79 residues), 51.1 bits, see alignment (E = 9.1e-17) amino acids 1622 to 1701 (80 residues), 28.8 bits, see alignment (E = 8.3e-10) amino acids 1832 to 1909 (78 residues), 47.8 bits, see alignment (E = 9.5e-16) amino acids 1925 to 2018 (94 residues), 34 bits, see alignment (E = 1.9e-11) amino acids 2030 to 2123 (94 residues), 54.5 bits, see alignment (E = 8.2e-18) amino acids 2148 to 2223 (76 residues), 42.6 bits, see alignment (E = 4.1e-14) amino acids 2249 to 2328 (80 residues), 47.5 bits, see alignment (E = 1.2e-15) amino acids 2458 to 2535 (78 residues), 27.6 bits, see alignment (E = 1.8e-09) amino acids 2556 to 2641 (86 residues), 58.9 bits, see alignment (E = 3.4e-19) amino acids 2669 to 2744 (76 residues), 47.3 bits, see alignment (E = 1.4e-15) amino acids 2760 to 2853 (94 residues), 35.4 bits, see alignment (E = 7e-12) amino acids 2866 to 2958 (93 residues), 56.6 bits, see alignment (E = 1.8e-18) amino acids 2973 to 3058 (86 residues), 45.7 bits, see alignment (E = 4.3e-15) amino acids 3085 to 3163 (79 residues), 48.9 bits, see alignment (E = 4.4e-16) amino acids 3292 to 3371 (80 residues), 31.3 bits, see alignment (E = 1.4e-10) amino acids 3497 to 3578 (82 residues), 47.2 bits, see alignment (E = 1.5e-15) amino acids 3594 to 3687 (94 residues), 35.5 bits, see alignment (E = 6.7e-12) amino acids 3697 to 3792 (96 residues), 56.8 bits, see alignment (E = 1.5e-18) amino acids 3808 to 3892 (85 residues), 45.1 bits, see alignment (E = 6.7e-15) amino acids 3912 to 3997 (86 residues), 54.2 bits, see alignment (E = 9.7e-18) amino acids 4008 to 4103 (96 residues), 38.2 bits, see alignment (E = 9.3e-13) amino acids 4122 to 4212 (91 residues), 39.3 bits, see alignment (E = 4.2e-13) amino acids 4445 to 4536 (92 residues), 30.2 bits, see alignment (E = 2.9e-10) amino acids 4557 to 4645 (89 residues), 29.9 bits, see alignment (E = 3.6e-10) amino acids 4672 to 4753 (82 residues), 46.1 bits, see alignment (E = 3.3e-15) amino acids 4773 to 4861 (89 residues), 48.4 bits, see alignment (E = 6.3e-16) amino acids 6012 to 6100 (89 residues), 53.1 bits, see alignment (E = 2.2e-17) PF13750: Big_3_3" amino acids 4281 to 4423 (143 residues), 15.7 bits, see alignment (E = 5.4e-06) PF01839: FG-GAP" amino acids 5491 to 5527 (37 residues), 29.6 bits, see alignment (E = 2.8e-10) amino acids 5562 to 5600 (39 residues), 35.9 bits, see alignment (E = 2.9e-12) PF00353: HemolysinCabind" amino acids 5694 to 5718 (25 residues), 24.2 bits, see alignment (E = 1.4e-08) PF13517: FG-GAP_3" amino acids 6527 to 6616 (90 residues), 27.5 bits, see alignment (E = 2.2e-09)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (6778 amino acids)

>GFF6562 T1SS secreted agglutinin RTX (Variovorax sp. SCN45)
MFSLEVIAKRGGKVSQILVNEISLKAASVIRIGLSNDRIKGMRRVGNDLIITAVSGEVVT
VHDFFTPFNGHSSNLVLSDNQEGLWLAEIGENQGDLAVEYSNIDSIEPLLLHQDFDLGLL
PFLVGGGLAAGAAFSGGGGDNLQSFLFSSPPPQTPSNKTSPAAPTVNPTNGSLITGMAEV
GSMVTIKDDSGNVIGSATVAADGAYSITPTAPPKDGTVLHVVATDAAGNTSPETTAAVDG
KPPVIGIAIVNDANKDGFINASEKGADVTAKITLVSGAAVGDVITLAAGTVSSSITLTAA
DVANGFVNASFPNPVEGGAINVSATSRDLAGNVSMPVTTGSVRLDTTAPGAPAIGAASDN
MGPVQGPLASGGVTDDTTPTLTGSGATAGDVIKVYDNGSAIGSTTVKADGSWSFTPARPL
AEGAHRLTTTAIDPAGNESRPSAAFTVNVDTTPPAALDASSIQVLDDIGAVRGPIAAGAQ
TDDSKPEYIGKTDPAQVSSINVYDNGKLIGSTAVNADGSWRFTPALPLATGAHSFTAQAV
DAAGNISAITPASTFTLLGDAPAAPAITGVSDNKGSITGNIAKDASTDDNTPTLSGTGTV
GTVVTVYADDVAVGSASVAANGTWSVTTSPLSGDGVKKLKAIAVDGAGQASPATGDYPIV
LDTTAPTKPATVVATDDQGAVTGAIAAGGSTDDASPAFSGSGAKAGDTVKLYDGATLIGS
TAVNADGSWSLSPEKPLGQGAHSITHTLTDAAGNTSAASAPLTFTVDTSNVVVSVGHAVD
DQGSKQGNLASGAVTDDTTPTLVGTATAGAIVTVTENSTVVGSTTADANGNWSLTLPAQA
EGAHKYTATAVNAAGTKGEASLSLTIDTTAPNAPAIGKATDDVGSVQGPLTSGSATDDTT
PTLTGSGATPGDVIKVYDNASPIGSTTVQPDGSWSFTPTTPLTEGLHRLSTSAVDAAGNE
SPRSGDFTVNVDITPPPQLNASLIQVLDDVGAIQGPIASGAQTDDSKPTYAGKADPAQVA
SINVYDNGKLIGSTAVNADGTWRFEPTLPLDTGPHSLTAQAVDSAGNVSATTPASTFTLL
GTAPAAPAITGVSDNRGSVTGNIAKDASTDDNTPTLSGTGTVGTVVTVYADGVAVGSASV
AANGTWSVTTNPLGADGVKNLSAVAADGAGQTSAATGIYPIVLDTTPPSTPSMIAAADKV
GAVQGPIVSGDTTDDVSPTFSGSGVKAGDTVRLYDGATLIGSATVATDGGWSVTPGAPLG
AGAHSITQTVTDAAGNTSAASAPLTFTIDTSDVIVSVRQSLERPPARGARQIAGLTNDTT
PTLAGKATAGAVVTVTEGAAVLGSATADANGNWSLTLSEQAEGAHEYKATAVNAAGTTGQ
AVLGLTIDTTPPKIPAIGNATDDVGAVQGQLVNGGASDDTTPTLTGNGATAGDVIKIYDN
DSAIGSTTVKADGSWSFTPTTPLAEGTHRLTATAMDPVGNESKPSSDFVINVDTIAPATP
AAATGYADNVGSVQSPTSTAKITDDTTPGINIGTVPTGLTPSLYVDGTKVASTYDPVAGT
LTPNVPLAEGSHQIGYTLTDAAGNESKQAPALSVIVNTVALPPPGAPTGYADNVGTIQSQ
TSTEPTTDDTTPGLNIGTVPAGSTPSLYVDDVKVAATYDPALGTLTPDAPLAEGTHRISY
TLTDTAGNESKPAPALTVTVDKTAPVAPAAPTSYADNVGTVRNPASTAPTTDDTMPGLNI
GTVPVGTTPALYVDGIKFAATYDPVAGTLTPNAPLTEGSHRLSYTLTDAAGNESARSGAL
AVNMDTTPPPALDASALQVLDDVGATQGPLASGAQTDDSKPTYAGKADPAQVASVNVYDS
GVLLGSTEVNADGTWRFTPMLPLATGTHSLTARAVDAAGNVSAITPASTFTLLGDAPAAP
AITGVSDDKGSVTGSIAQNASTDDNTPTLSGTGTVGTVVTVYADGVAVGSTSVAANGTWS
VTTSPLGSDGVKNLKAIAVDGAGQASPATGDYPIVLDTTAPATPTTVTATDDQGAVTGPI
APGGSTDDASPAFSGSGAKAGDVVKLYDGAALIGSTAVNADGTWSLTPNKPLAQGAHSIT
HTLTDAAGNTSAASAPLAFSVDTSGVVVSVGHAVDDQGGKQGNLAPGAATDDTTPTLVGT
ATAGAVVTITENSTVLGSTTADANGNWSLMLPAQSEGAHKYTATAVNAAGTKGEASISMI
VDTTAPNVPTIGKATDDVGSVQGPLTTGGASDDTTPTLSGEGATPGDVIKIYDNASPIGS
TTVKPDGTWSFTPTTPLAEGAHQLTATAIDPVGNESKPSGSFVVNVDTTPPPTPSAATGY
ADNVGSVQSPTSTAKITDDTTPALNIGAVPAGLTPSLYVDGNKVASTYDPVAGTLTPNVP
LAEGAHQIGYTLTDTAGNESKQAPALAVAINTNAPSTPTAATGYADNVGAIQSPNSSAST
TDDTTPGINIGTVPSGLTPSLYVDGAKIASTYDPATGTLTPSTALPEGKHRISYTLTDAA
GNESKQAPALAVIVDKSAPAVPAIGSASDNMGSVQGPLASGGVTDDTTPTLTGSGATPGD
VIKVYDNASPIGSTTVQPDGTWSFTPTTPLAEGSHRLTTTAVDPAGNESPPSGAFTVNVD
TTAPAALDASKIQVLDDVGTVQGPIASGAQTDDSKPEYTGKADPAQVSSINVYDNGKLIG
STAVNADGTWRFTPALPLATGPHSLTAQAVDAAGNVSAITPASTFTLLGDAPAAPAITGV
SDDKGSVTGSIAQNASTDDSTPTLSGTGTVGTVVTVYADGVAVGSTSVAANGTWSVTTSP
LGADGVKNLSAIAVDGAGQASPATGAYPIVLDTMPPATPGTVVATDDQGAVTGTIPAGGS
TDDASPTFSGSGAEAGDIVKMYDGATLVGSAAVTSDGKWSLALSTPLGDGAHSITHTLTD
AAGNTSAASAPLAFTVDTSGVVVSVGHAVDDQGSKQGNLAPGAVTDDTTPTLVGKATTGA
IVTVTENSTVLGSTTADANGNWSLTLPAQSEGAHKYTATAVNAAGTKGEASISLTVDTTA
PNVPVIGKATDDVGSVQGPLTTGGASDDTTPTLSGEGATPGDVIKVYDNTSPIGSTTVKP
DGSWSFTPTTPLAEGAHQLTATAIDPVGNESPRSGVFVVNVDTTAPATPTAATGYADNVG
SVQSPTSTAKVTDDTTPGINIGTVPAGLTPSLYVDGTKVAATYDPVAGTLTPNTPLAEGA
HQIGYTLTDAAGNESKQAPALSVTVNTIAVPPPAAPTGYADNVGTIQSTASTASTTDDAT
PGFNIGKVPSGLTPSLYVDDIKVAATYDPVTSTLTPTTALTEGEHRISYTLTDAAGNESK
QTPALTVTVDQTAPAAPSTPTSYADNAGTIQSTTSTAAITDDATPGINIGKVEPGSRPTL
YVDGVKVAATYDTLNGTLTPNAPLTEGTHRISYTLSDAAGNESAHSGALVISVDTTAPAA
LDASKIQVLDDVGAVQGQLASGAQTDDSKPEYVGKADPAQVASVNVYDNGKLIGSTAVAA
DGTWRFTPALPLATGPHSLTAEAVDAAGNVSAITPASTFTLLGDRPAAPAITGVSDDKGS
VTGSIAQNASTDDNTPTLSGTGTVGTVVTVYADDVAVGSTSVSANGTWSVTTSPLGADGL
KNLKAIAVDGAGQSSPATGLYPIVLDTTAPTTPATVVATDDQGAVTGSIPAGGSTDDASP
AFSGSGAKAGDVVKLYDGAALIGSTAVNADGTWSLTPEKPLVQGAHSITHTLTDAAGNTS
AASAPLTFTVDTSGVVVSVSHAVDNQGSKQGNLAPGAATDDTTPTLVGTATAGAIVTVTE
NSTVLGSTTADANGNWSLTPPVQAEGAHKYTATAVNAAGTKGEATLALSIDTTAPSVPTI
AKATDDVGSVQGPLTSGSATDDTTPTLSGSGATPGDVIKVYDNGSAIGSTTVQPDGSWSF
TPTTPLAEGAHQLTATAIDPVGNESKPSGSYVVNIDTTAPIDKATLSAIGTDTGTSNSDF
VTSDRTLVATITVDAAIEPGATVQISLDSGKTWNNATLVGGNTYQFDNTAVSLSDGSHTV
LTRVVDAAGNAGASSSQVVVIDTSAPTAENAVAITAYIDDVAPNTGEYGSGTSTNDTTPT
LKGTVAGLKTGDVVQIYEGNVLLGTATVSGSAWTFATPALTDGSAHSYTAVIADAAGNKG
TASAAFSLTVDTTAPTQAVTIASYTDDIGTNRGDFASGTNTDDTAPVLNGTLSAAIGATD
VVRIYEGTTLLGTATVTGTSWTFAVPALASGSTHGYTAAIADAAGNVGAASPVFTLTVDT
TPPAQNVTIAAYTDDVGTNRGDFASGTTTDDTTPVLRGTLSEAIGATDVVRIYEGTTLLG
TATVTGTTWTFATPALSSGSTHTYTAVVADAAGNQGASSSGFTLTVSTSAPAQTTSITAY
TDNVGTNQGDFASGTSTDDTTPVLRGELSAAIGAADTVRIYEGTTLLGTATVTGTRWSFA
TPTLADGSTHTYTAVVTDAAGNEGVPSSRFTLTVDTTAPTQTVAITSYLDNQDPQQGTFT
SGSTTNDTTPQLNGTLAGTLGTGEVVAVYRDGVRLGAATMTGAATWTFQDTGLVNGTGYS
YTARVEDAAGNRGAASAAFTLTIDQTSPPAGLVIDGAMDDVDPVTGPIISGSTTNDARPE
LKGAGAEPNGTVRIYDNSMLIGSTTADSTGKWNFTPAAGKELAEGPHRLTASSLDAAGNE
GPQSAPLSFTVDTVAPSTAPSIDSIMDETAPVTGPITAGGTTNETRPALKGAGAEPNGTV
RVYDNGTLIGSATADGTGKWSFTPTAGKELANGPHSLTTSSVDAAGNEGPKSTPLTFTVD
TVAPPVATLSLGNYSDSFPAAGTLAANQSSDHNSTDNTFDLVLIGADASAASYEVSTDGG
TSWKTTTAAQSNLSDGKYLFRATLTDAAGNSTAAANVIEVTVDRTSPALDLQRVGGSLVA
GKAEAGALVAIDVGNDGSIEVSVTADANGNWTWTPSTPIAANTTVSAVAYDLAGNASSKG
SQAADTTPPVVTIQKTDGNRFSGTTSDADTPMVSPTATKPITVTLSVDKNADGVIDYVLP
FTATVTADGAWSIDASAAPVNIGAIVTAVAQDYNGNRSAPATVTVGGGTSKISGSASNDN
FGYDVQAIGDFNGDGYNDFAVVAPHGSAAARAANKWSVNILYGSKQGLPDLSDVSNLPGT
DGLKIFTSGDISDSNILTAVQGYGDVNGDGYSDVILYDDNLNSAWVIFGRSSESAGSAPV
NVDVRTIISSGGNSDGVAIVQREGGSTWFGAGGALVDVNGDGYADIIMQDWQRGTGSSGT
AILYGHAGAAGSADWGNYYVGFTGSSPASYVSDSRNSSVESSRPHTVIYNDNTNGYPDNV
MNIGDINGDGYSDFAYSMYNARNPVGNIENAGAIQVIYGTARGFPQDYSLQTDYVNITNG
FRVYGEERNQYLGTYIDPEPYGYLSNTGMPISSGDVNGDGIADMIIGSPQFGPDAGEQKG
PGRVYVVYGKVGGATSNLNLASLSASDGFVITASDSTPDAMFGNGTSVGDFNGDGIDDIA
IGAPLADVKGMVNNGAVYIVYGQQGGYSGTMSVAATYWGDKSANSGNLTYGQNGSASSGS
MLGVNVALSDLNGDGQADLALGSSYRGTTGAPAAGYLEVVYSSAFNFTNLLTVGDDVIAA
TAGRDRLSGGAGNDTITGVRAGDSAYGGAGNDSIRINEITGVVRVDGGLGIDTLVVDGSH
ITLDLPRLGLKVQGFENFDLGTGAGNTGNVLKLRLSDVLNQQSSTGAGHGTGQGHLRVTG
DAGDTVQLHQEAGRWSSTGATSIGGVNYTVYHNSALPTTNTLGDVWVQQGVKVVLNSSDN
RAAPTLSQTVVIANYTDNQDPQQGTFASGTMTNDSTPQLNGTLAGSLGLGEVVVVYRDDI
RLGTATMTGASTWTFQDASLADGITYAYTARVEDGRGNLGATSGALVLTVDQTAPTAQPS
VDGAIDDVAPITGSITPGSTTNDARPDFTGSGAEPNGTVRIYDNGVLIGSATADSAGKWS
FTPPVGKELANGAHSLTASNADAAGNEGPQSNPLAFKVDTAMPSMTAAITGYIDDAGPAK
GPFGNGTTTDDADPVLAGSLTAPLSLGQVVRIYEGSTLLGTATVNGTAWTYDLGVLADGS
THTYRAAVASAAGSEGTMSSSFSLTVDYALTVNRQTTVDTTPLVTGSMPFKLANGQYIEV
TIAGKTYSSANGAVVVDSTHSTWYVQVPSAVDLGTYDVRAVVKNAAGVQMSTDDTAGELI
VSAAPTVTVGSAASDPNQKATAYTLGENGMWRIHTNQTMLDANGTDSASLGSFGQTKLTS
NSPTDNPAYVGPNYVQNATFMDFNRDGHMDLFAEDSTYDDGQQAFLFNGSKYKAVQVGGS
TVTRGTDKEDGDKLTADSANTYSWFGGVVAFDKTGDGLVDLAYGDQTPNDAISGGGYDSQ
IVLNTDGKILGMVKDGAYTEDVAATYGASAPTNAGNATFDMELSGVDLNNDGKVDLVYHA
TAGLTKMGGPANKPFVEPYSSDAYRLVVATNKGDGTWENTQIIEKTFQRLDDDPYSGNGV
SMTWSDFNGDGYMDLFMGRGYGATPNEQYQSRILFNDGHGRLGMIRLKDKQTVGEKPSGM
YLLGDLLQGGASLAVDWNGDGKMDVIELPGFGTGGGMTKDGNRGPINLYTNNSSGTDIDF
VTTNLLGGTEEIGVWNHRLETDDAVTGAVAADIDWDGDRDLLAFTQKGNTRFITNTTT