Protein Info for PS417_03330 in Pseudomonas simiae WCS417

Annotation: Short chain fatty acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 104 to 131 (28 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 195 to 218 (24 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details amino acids 277 to 301 (25 residues), see Phobius details amino acids 313 to 337 (25 residues), see Phobius details amino acids 358 to 380 (23 residues), see Phobius details amino acids 439 to 461 (23 residues), see Phobius details PF02667: SCFA_trans" amino acids 12 to 455 (444 residues), 293.1 bits, see alignment E=2.2e-91

Best Hits

KEGG orthology group: K02106, short-chain fatty acids transporter (inferred from 98% identity to pfs:PFLU0691)

Predicted SEED Role

"Short chain fatty acids transporter" in subsystem Polyhydroxybutyrate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UCE1 at UniProt or InterPro

Protein Sequence (472 amino acids)

>PS417_03330 Short chain fatty acid transporter (Pseudomonas simiae WCS417)
MADAIEESRYARFALRCSNFAERWFPDSWVFAALAVIIVAVATLGMGAAPTEAAKAFGDG
FWSLIPFTMQMAFVVIGGYVVASSPPAVKLIDRLARIPKNGRSAVAWVALISMVASLLNW
GLSLVFGGLLVRALARRTDLRMDYRAAGAAAYLGLGAVWALGLSSSAAQLQANPASLPPS
ILSITGVIPFNDTIFLWQSGVLLLALIVVSLIIAYATAPGPNSARDAKACGVDPAFNMPK
LQAPTRPGEWLEHSPLLTVLLALLAAGWLFHEFSTKPAISAISGLNTYNFLFIMVGALLH
WRPRSFLDAVARAVPTTTGVLIQFPLYGSIAALMTVVKGGDGQTLAHHISLFFTSIASHD
TYALLMGVYSAVLGFFIPSGGGKWIIEAPYVMQVANDLQYHLGWAVQIYNAAEALPNLIN
PFYMLPLLGVLGLKARDLIGFSFVQLLVHTPLVLFLLWALGTTLKYLPPVMP