Protein Info for GFF6557 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 49 to 68 (20 residues), see Phobius details amino acids 88 to 113 (26 residues), see Phobius details amino acids 129 to 146 (18 residues), see Phobius details amino acids 152 to 169 (18 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 355 to 375 (21 residues), see Phobius details amino acids 382 to 404 (23 residues), see Phobius details PF04235: DUF418" amino acids 254 to 423 (170 residues), 145.5 bits, see alignment E=7.5e-47

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>GFF6557 hypothetical protein (Variovorax sp. SCN45)
MTFDPARLPRYSAAGGSLSHSNTAAARARTSYAPAPAPLTRRLELLDALRGFALFGVLLV
NLRSFSLYEFITQSQRGALPTAAWDRAIALAMELLVDAKSITLFTLLFGVGFAMQTRRLA
DKADGTRLYVRRMLVLLAIGLVHAYLFWWGDILRYYAVFGLLLLAFTKMSTRTLTVLGVC
VAVVLPVLLQPVLPGLLPQQLSRPQASAAAWTAFVSGDWATMLQGNLTRDIRMRIAVWSL
PLFVFGRLLIGMAIGRTRVLQESVAHRRFWVRLLRASFGVSVVASVLLVLRDYNSTGVVA
VWLQDGAGLVATRLLREIAPLAQGVFYMAGFVLLFQQAAWRHWLRKLAPMGRMALTNYLA
QTLLGLGLFYGIGLGLGPQFGLAGVALAGLAIFGLQALFSCWWLGRFRFGPAEWVWRSLV
YGKPQPMRLCATA