Protein Info for GFF649 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 844 PF00072: Response_reg" amino acids 17 to 117 (101 residues), 40.9 bits, see alignment E=7.1e-14 amino acids 725 to 837 (113 residues), 59.5 bits, see alignment E=1.2e-19 PF01590: GAF" amino acids 179 to 315 (137 residues), 31.6 bits, see alignment E=7.7e-11 PF08448: PAS_4" amino acids 349 to 449 (101 residues), 36.1 bits, see alignment E=2.4e-12 TIGR00229: PAS domain S-box protein" amino acids 349 to 455 (107 residues), 50.5 bits, see alignment E=1.1e-17 PF00989: PAS" amino acids 355 to 433 (79 residues), 24.9 bits, see alignment E=6.1e-09 PF08447: PAS_3" amino acids 363 to 433 (71 residues), 44.1 bits, see alignment E=7.3e-15 PF00512: HisKA" amino acids 472 to 536 (65 residues), 39.4 bits, see alignment 1.8e-13 PF02518: HATPase_c" amino acids 580 to 699 (120 residues), 72.9 bits, see alignment E=1e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (844 amino acids)

>GFF649 no description (Variovorax sp. SCN45)
MNSAGGAVAANPQPPGILILEDSRFDVELLLEALSRALPAATTHVVRDERGFVEALNGGG
FSLILSDYELPGFSGAHALEVARRLAPETPFVFVSGVIGEDNAVELLKSGATDYVSKGRL
ARLPVVLERALKESDDRRAKALAERRLNAANAAIMEAEARRLALMELGDRIRDMDEPGDI
AYAASEMLGRRLAVDRAGYGLVDTAAETIAITRDWTAPGVASLAGLLHFRDYGSYIDDLR
CGVTVAFDDARVDPRTRDTAAALEAITARAAVNMPLTERGGLVGLLYLNHGQVRPWLADE
LDFIREVGDRVRSAIARREAQIELKAFAESLERQVEARTYERDRTWALSQDLLGVANAQG
YFVSVNPAWETVLGWSADEIRALPFRTLVHADDLALTEAELQRLTLGERTTGFENRYRMK
SGGYRWLSWTAVPDNGLLYAAARDITEQKERAAELDTAREQLRQSQKLEAVGQLTGGLAH
DFNNLLAAISGSLELMRRRGLDGKPADMERYVGVAQGAVKRAASLTHRLLAFSRRQTLEP
KPLNANRLVTEMEELLRRTLGPQIALETVAAVGLWNVHADPGQLENALLNLCINARDAMP
EGGTLVIETANRWIDARTARGRDLPMGQYVSLTVSDNGVGMPPEVVARAFDPFFTTKPIG
MGTGLGLSMIYGFAKQSGGQVRIYSEVGKGTSVSIYLPRHDMQEEVAAAPAETMLAPRAD
QGDTVLVVDDEPALRMIIVEVMQGLGYATLEAGDGAEALRILQSPRQRIDLLVSDVGLPG
GMNGRQVADAARTARPGLKVLFITGYAENAVLSHGHLDPGMHVMTKPFEMDVLARRVKQL
IESR