Protein Info for GFF6455 in Variovorax sp. SCN45

Annotation: Bll3817 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 TIGR01926: uncharacterized peroxidase-related enzyme" amino acids 8 to 182 (175 residues), 226.6 bits, see alignment E=1.9e-71 PF02627: CMD" amino acids 48 to 95 (48 residues), 33.3 bits, see alignment E=1.9e-12 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 63 to 95 (33 residues), 34.8 bits, see alignment 8.7e-13

Best Hits

KEGG orthology group: None (inferred from 97% identity to vpe:Varpa_2349)

Predicted SEED Role

"Bll3817 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>GFF6455 Bll3817 protein (Variovorax sp. SCN45)
MTPNNRYPLAELKDLPEDIRAAILAVQEKAGFVPNVFLALARRPAEWRAFFAYHDALMLK
EEGSLTKGDREMIVTTTSAANQCLYCVVAHGALLRIYEKKPLVADQVAVNYRKADITPRQ
RAMLDFAMKVCDRSHEIDDNDFPPLHAHGFDDEDIWDIAAITAFFGLSNRMASFSGMQPN
NEFFLMGRLPREKK