Protein Info for GFF6434 in Variovorax sp. SCN45

Annotation: Inner membrane protein YqiK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 728 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 93% identity to vpe:Varpa_2371)

Predicted SEED Role

"Inner membrane protein YqiK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (728 amino acids)

>GFF6434 Inner membrane protein YqiK (Variovorax sp. SCN45)
MEPIIFAIVILAVVILGLFAMFAKFYRKIEQGHALIVNTLRAEPEVTFTGRMVYPIIHKA
ELMDISVKTIEIDRSGNEGLICRDNIRADIKVKFFVRVNKTADDVLKVAQGIGCARASNH
ETLEELFSAKFSEALKTVGKSMEFVDLYQARDGFRDQIISQIGNDLSGYVLEDAAIDFLE
QTPLSELDSNNILDAQGIKKITELTAVEHVRTNELRRNEEMQIKKKNVETQEALLELERQ
QADATARQQREIASVRAREEAETAKIQAEERTKSETARLVAEQSVSVQQENVQREKEVAE
NNRKRAVAVEEEKVIRARDLEIVDREKEVTLQRIEKDKAVEVQKKAIADVIRERIVVERT
VAEQEEAIKELRVVAEAERTKKSVVIMAEGQAEEKMVIDLKQAETQEKRARHKAAEELTL
ADAKLKIAERDAESKKREAEGVEAITAAPGLAAAKVEIATAQAKLASFEAEASGKEKLGL
ADVHVRQADADAILKAGQADAQVIEARSQAEAAGMRAKFEAEASGKEKLGLAEVNVRTAD
AEATLKSGQADAQVIEARFGAEAKGLHEKFEAMKSMSPETRDHEEFRMRLEKSHIETLKG
IDAQTAIAKEQAEVLGTALANAKIDIVGGQGDYFDSFVRSLSVGKGIDGVISKSNALQVA
FKDQLSGERDVVKDLRDIVGALGSSSGEIQNLSVAALMKKISSDGSESQKAALHNLISSF
RPLNGDAR