Protein Info for PS417_00325 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details PF02104: SURF1" amino acids 24 to 225 (202 residues), 129.1 bits, see alignment E=1.5e-41

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfs:PFLU0063)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U4Y9 at UniProt or InterPro

Protein Sequence (254 amino acids)

>PS417_00325 hypothetical protein (Pseudomonas simiae WCS417)
MKTSIASAIKCFRPGVAPTVVVLVLLPLMVGLGFWQLSRGHEKQLLVDSYADRRAADPIS
SAQLNDKADPAFRRVRLRGQFDAEHSVFLDNRLRDGKAGVELLQPFHDQASGLWLLLNRG
WLPWPDRRTPPIFTTPDQPVNLDAWVYIAPGETFQLRADPTTAQWPRLLTALHPAALWSE
LGRNGFAYELRAEAGPGTYETTWPIVAMGPEKHVAYAVQWFAMSLALLALYLYLGLHNKK
EKPHGSGHQSTQHV