Protein Info for GFF6368 in Variovorax sp. SCN45

Annotation: T6SS lysozyme-like component TssE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 TIGR03357: type VI secretion system lysozyme-like protein" amino acids 25 to 174 (150 residues), 66.9 bits, see alignment E=7e-23 PF04965: GPW_gp25" amino acids 53 to 156 (104 residues), 69.9 bits, see alignment E=6.6e-24

Best Hits

KEGG orthology group: K11897, type VI secretion system protein ImpF (inferred from 98% identity to vap:Vapar_0197)

Predicted SEED Role

"Uncharacterized protein ImpF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (182 amino acids)

>GFF6368 T6SS lysozyme-like component TssE (Variovorax sp. SCN45)
MSALIDRHIDGDSQQESVARDRLQPVLLDRLTDKAPQSRQERAGAFLMSGKLLRDSVLRD
LQWLLNTTNFGADHGINAMPRARRSVVNYGVRGWAGGRMSEVDFADVEAAIRAAIIDFEP
RIMKDSIDVRCVTDATDLEHHNLLALEIRGTLWSVPYPIEFILRSELDLESGHMVLRPTG
GL