Protein Info for GFF634 in Variovorax sp. SCN45

Annotation: Urea ABC transporter, permease protein UrtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 64 to 82 (19 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 200 to 219 (20 residues), see Phobius details amino acids 248 to 273 (26 residues), see Phobius details amino acids 285 to 311 (27 residues), see Phobius details amino acids 323 to 347 (25 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 28 to 346 (319 residues), 432.9 bits, see alignment E=5e-134 PF02653: BPD_transp_2" amino acids 36 to 335 (300 residues), 113.4 bits, see alignment E=5.3e-37

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 94% identity to vap:Vapar_3143)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>GFF634 Urea ABC transporter, permease protein UrtC (Variovorax sp. SCN45)
MNFIKASIQRYQLGSLLLLVLLLAVVLPLSLDIFRLNLVGKYLTYAFVAVGLVMVWGYGG
VLSLGQGVFFGIGGYAMAMFLKLEASDPVTTKIQSTPGIPDFMDWNQITELPALWLPFKS
LPLSLALVVLAPMALAWLVSFAMFKRRVGGVYFAIITQAVALICTVLIIGQQGYTGGVNG
MTDLKTLLGWDTRTDGAKYVLYYVCVGLLVLSILLCRWIQTSKLGTLLLAMRDKEDRVRF
SGYDVSNFKVFIFCLAAGLSGIGGAMFALQVGFMSPSFVGIVPSIEMVIFCAVGGRMSLV
GAVYGALLVNAGKTLFSESFPDLWLFLMAGLFIGVTMAFPMGLAGVWEEKIRPWWKSRRQ
ALREAAVKPPATPTAAQPAAQPPEPTLPEGVGSQRA