Protein Info for GFF6331 in Variovorax sp. SCN45

Annotation: D-octopine dehydrogenase (EC 1.5.1.11)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF03807: F420_oxidored
  • amino acids 7 to 104 (98 residues), 24.1 bits, E=9.4e-09
• PF01210: NAD_Gly3P_dh_N
  • amino acids 8 to 105 (98 residues), 26 bits, E=1.7e-09
• PF02558: ApbA
  • amino acids 8 to 154 (147 residues), 27.4 bits, E=4.6e-10
• PF02317: Octopine_DH
  • amino acids 185 to 326 (142 residues), 121 bits, E=9.2e-39

Best Hits

KEGG orthology group: None (inferred from 83% identity to vap:Vapar_0420)

Predicted SEED Role

"D-octopine dehydrogenase (EC 1.5.1.11)" (EC 1.5.1.11)

MetaCyc Pathways

• pyruvate-derived opine biosynthesis I (bacteria) (1/3 steps found)
• pyruvate-derived opine biosynthesis II (marine invertebrates) (1/5 steps found)

KEGG Metabolic Maps

• Arginine and proline metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.5.1.11

Protein Sequence (356 amino acids)

>GFF6331 D-octopine dehydrogenase (EC 1.5.1.11) (Variovorax sp. SCN45)
LNKSAYRVGIAGTGAIALASAAWLRQAGHGVTVWSPGGQGAQALRTQALEAGGIQSFSVN
VEVADDPAGLCAASDVLLLALPVNGHRRVMDALLPFLRDGQTVIVSSMASLSSLYLHEAA
HRAGRQITVASFGTTVLTARRESGTQVRVMTRRKAVGVSALPGARVGEAVALCAELFGDG
FFPQESALASALANVNPQSHGPLAVFNWTRIERAENWPQYHCMTPGVSRAIEALDRERRA
VAKAFGIEVGPIEAHFARSFGTTAEKLEDIAAELHAKRGGPPGPTQVDTRYVSEDMPYGL
AFVEALGAIAGVPTPATRTIVDAASLVNGIDYRRENDLLEPLGLARESVAGLLARL