Protein Info for GFF6236 in Variovorax sp. SCN45

Annotation: VgrG protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 TIGR03361: type VI secretion system Vgr family protein" amino acids 7 to 502 (496 residues), 532.7 bits, see alignment E=8.8e-164 TIGR01646: Rhs element Vgr protein" amino acids 18 to 502 (485 residues), 451.9 bits, see alignment E=3.1e-139 PF05954: Phage_GPD" amino acids 23 to 328 (306 residues), 312.5 bits, see alignment E=6e-97 PF04717: Phage_base_V" amino acids 386 to 452 (67 residues), 47.7 bits, see alignment 3.2e-16 PF13296: T6SS_Vgr" amino acids 477 to 583 (107 residues), 116.5 bits, see alignment E=1.2e-37 PF10106: DUF2345" amino acids 617 to 763 (147 residues), 134.3 bits, see alignment E=6.3e-43

Best Hits

KEGG orthology group: None (inferred from 71% identity to vap:Vapar_3859)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (884 amino acids)

>GFF6236 VgrG protein (Variovorax sp. SCN45)
MKRRVEITTPLGDALKFHRLVGREALSQVHALDLDLLANSNAIDARALLGKGATVSMQTE
TGRRYLGGIVTSFGLAQEDARRSFYKMRLRPWLWLATRRSDFRVFQERTVPEIITAVLAR
YGYPMEQKLRHSYRAWNYCVQYGEDDCSFIARLCEHEGIHFHFRHEADRHVLVFADDIAG
SHGPLPGGETVRYHPHEQSGMTGGPEPGERIHEWELVEEVRSGRHYRSHFDFEHPGADLS
FMRRASPGHEHDDHELYEWPGNHVRHDDGETCARIRNEEQLSGRSRARGRSNLRELAPGH
TMRLTGHPRADQNRQYLLLGVSYHLRENLEASEGTGHAEGSFQRFAFDALPTSCAWRPPR
TTPKPRTDGPQTALVVGPAGEEIWTDRYGRVKVRFHWDRLGRHDEHASCWVRVSTSWAGA
AFGAAALPRIGQEVIVDFLNGDPDFPIITGRVHNADEMPAWQLPGQAHLSGIRSREPGGG
RSNHLALDDTNGKVQAQLRSDHQSSSLGLGHIARIEDTAGRKEDRGQGFELRTDGHGAIR
ASEGLLITTEARGNAQAHIIDMGETVARLADGQALHERLSKAAREAKAHEAGDQDTVAME
LKAQHDEIRGSGGDPAQGVFPELQAPHLVLASPAGIQTAAEGSTHIVSDGHNALTSGAHT
SVSAGKSFLVSARSAVRMVALDKGIRMAAAAADIDISALKHCINVLARLNIKLEADRIAI
TAREEVLINGGSSFSRWNSSGIEHGTDGQRREHAATHSLVGPKSLPVPPMDALFPNLDHG
PCKADYQLFKTDNRPFEHYAYEIHDLHREMLESGDTSKAGQTRRVNSDVSIGLKGYKQIT
RESERITESWESRLNAKAREVAFRNLQISRAAPAQGGAEEAGSA