Protein Info for GFF6235 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 706 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF12770: CHAT" amino acids 434 to 697 (264 residues), 212.6 bits, see alignment E=1.7e-66

Best Hits

KEGG orthology group: None (inferred from 92% identity to vpe:Varpa_0539)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (706 amino acids)

>GFF6235 hypothetical protein (Variovorax sp. SCN45)
MALGLAGVLAAGFGSPASAQQQQQQQQRAPAPTNAEAAADRMEQSRLDDTDTLLALTRDG
AVLYGQDNVKLSGYQYCSQAVALAEAGEFRQSVRAASKALHLANATNDPNLMAMANRDLA
IVYSYSGQLEKAEEFAREALRHPARDPKLVVGPVHKVIGDVRTRRGDFSGAVLSYDEALA
NSSSRYAPLVQASLVNALIESGDAARAREVLGTMAPPKDAPLTAQLDRTRARLLLAENKP
AEARDAYRALTARQVGADTEYYRLWAWDGVARSELALGRKQAAAEAVGRALGDVDKVRAK
FRSEEFKMGLFSDLQTVFERGVAVYSDAGDARQAFEVSEHSRSRALLDAVRGRAKINEQA
ASTIDLPALQATLAPDERVVQFHSLPDRLVVWVVSANSITEKTVAVKRDELNELVETFRN
SIVRGRRTAITNADKLGAALLGPLGLAPGQRLIVVPHGPLHYLPFQALRLDGRYVIETHP
VAVAPSISIAVQLAQRTPRVNASLTAFGNPRIEDKYDLPGAETEVKQLAQLFPRNTLYMG
AAATKTQFREVAARSPLMHVAAHAEADAVDPLYSRILLANEGGKQNFLEAHEILGMPMDS
TALVTLSACESGLGRIAQGDEVLGFTRSFLSAGSSSLIASLWPVSDDATAVLMSTLYGEL
AKGRDIQKAMQAGQLAVLKDPKMSHPFFWAPFNLIGNWRLTVGGAT