Protein Info for GFF6227 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 630 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 53 to 70 (18 residues), see Phobius details amino acids 151 to 173 (23 residues), see Phobius details PF00672: HAMP" amino acids 172 to 222 (51 residues), 27.7 bits, see alignment 5.5e-10 PF00512: HisKA" amino acids 252 to 317 (66 residues), 46.5 bits, see alignment E=6.3e-16 PF02518: HATPase_c" amino acids 362 to 472 (111 residues), 75.8 bits, see alignment E=7.4e-25 PF00072: Response_reg" amino acids 501 to 617 (117 residues), 48.7 bits, see alignment E=1.6e-16

Best Hits

KEGG orthology group: None (inferred from 91% identity to vpe:Varpa_0548)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (630 amino acids)

>GFF6227 hypothetical protein (Variovorax sp. SCN45)
MNWNFRVLRGLARLTFAQQLILLALVPAALATLAAIAVLTRQHLGNLTELMRANAQTVAL
QVATVAQAPLARMDRRALQRTAQSGTYQPHVQQVQIWTEDGEIVANSETTDRARGEGLQV
VVPIVGDDGRHNGKVMVEISLGAVQSARRSVWLNVTLVLAFSLVGVGLAGWWAARRISEP
IRALGKAVDRLGAGEDASVVVEGTSEVRHLQHGFNQAARALAESHRLLQSRINEATAELA
RKNQQLEVASQAKTRLLAAASHDLRQPLHALTLFSDGLANGETDPLKLQRIGHIRECVDS
LDRLFSELLNLSQLDAGVLQPQWADFPLDRLFDEISRNFRPVAEQQGLRLVVRKTDVWVR
CDYVMLSRILNNLVSNSLRHTIEGGVLIGARRRGKGVRIDVVDTGVGIAPQHQARVFEEF
YQVEPTGRQAARGARGMGLGLATVQRLADLLNTRVELSSKLHKGTCVRVLVRSAPAALPA
PALSAALAGIEEEESLANVRILVIDDERTILEGLAVVLANWGAEVLPAQTRAEALALADG
WAQPPDVVISDLLLQGGDNGLDVIAALERHPHGIGPGTARLLVTGETKPDRLREVANAGI
TVLYKPVSPRVLRQAIQAQRAAAAALLADV