Protein Info for GFF6222 in Variovorax sp. SCN45

Annotation: T6SS component TssM (IcmF/VasK)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 464 to 483 (20 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 15 to 1198 (1184 residues), 1227.6 bits, see alignment E=0 PF14331: IcmF-related_N" amino acids 209 to 469 (261 residues), 309.5 bits, see alignment E=2.6e-96 PF06761: IcmF-related" amino acids 521 to 831 (311 residues), 306.2 bits, see alignment E=4.6e-95 PF06744: IcmF_C" amino acids 1076 to 1181 (106 residues), 101.5 bits, see alignment E=4.3e-33

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 93% identity to vap:Vapar_0516)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1200 amino acids)

>GFF6222 T6SS component TssM (IcmF/VasK) (Variovorax sp. SCN45)
MIKKIFGFLFSPLLLTLLALIVVALLVWWIGPLVKIGALAPLESELTRAIVIGVIVLAVL
LRALYRRWRARRASRHLTDGLMKAPAARADAPVDGEQKILDTRFSEAVATLKQMRLHAAG
KKPGWRDWLSISGGSYLYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVGG
TRNCDWWFTDEAVLIDTAGRYTTQDSHQSEDKSAWEGFLGLLKKARPRRPLNGVFLTVSV
ADLLSQGPEARSQLAASIRARLLELDSKLTTRLPVYVLVTKSDLLYGFTDYFDDLGKEQR
AQVFGFTLPAEENLQVEEKGLSTAFNREFALLHNRVNDGLIARMQRETDGTRRAAIFGFP
AQFGSIGSLLSDLLEQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGSLARSFGIERA
MLAPQKSSGRSYFLTSLLREVVFPEQRLAGADVKLERRRHTLRVIGVTAMTLVTVGLLAA
WGYSTLQNMNYLKSVEARVEPARQNLAALPARVQNLVEVAPVLQGLRDIWKTPENRAGDE
PLSMTLGLYQGDKLDAAAMLTHQRALNDAFLPQIAKRIEDQLRTAQKDNLEYTYEALKSY
LMLYQPEHFDAEALKAWITLDWSRNLDRGIPEDQRKQLEDQLDVLIAQGPPRSPLKMDEN
LVRSVRAVLASYPLEQRVFSRLKRQRATKDIPAFSVAAATGPSGPLVFERISGKPLTEGV
PGMFTYDGYHKRFQNEVTVLTGLLANEDPWVLGQDRNTADRLRDVAALGALTDRVRRLYL
EEYVKQWEALLSDVRLIRANGLDKNIETARILSGVGSPLSNFLRAVVKETTLIPQGDAGK
DVVSKATETVRNTRKGLEDLFGGDPGRQVPAGKRIESIVDDRFEPLRRLVTAGGPNQPAP
IDDALKLFNEVYVYLTAVDTAVKGRTSPPPGDVAGKLKSDAGRLPEPVRSMVENLSQSGA
AQAQTAERGNLSQDLRPVAEFCARAIAGRYPFVGNSKRDVLPEDFGQMFGPGGLMDDFFQ
KRLAALVDTSTRPWRYKPVAERGAITTQALAQFERAARIKDIFFRGGGRGPSMRLDFKPV
EMDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPKGSNQVRIQVSPPSTTGSSGEAVDG
PWALFRALDDGQLEAGDAPEKFFITFQIGARKTRFEVTTNSVQHPIRLRELREFSCPEGL