Protein Info for GFF62 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 6 to 64 (59 residues), see Phobius details amino acids 81 to 97 (17 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 163 to 185 (23 residues), see Phobius details amino acids 193 to 210 (18 residues), see Phobius details amino acids 216 to 233 (18 residues), see Phobius details amino acids 240 to 260 (21 residues), see Phobius details amino acids 346 to 369 (24 residues), see Phobius details amino acids 381 to 397 (17 residues), see Phobius details amino acids 403 to 423 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 74% identity to vpe:Varpa_2880)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>GFF62 hypothetical protein (Variovorax sp. SCN45)
MRTLTFWSGIVCAFLCGLVDPAWGYAAVFVLSLVQIALLGSSGGSVFLLIHYATMLTYFS
LAPAMQIANDVDFWETGVLTTASHTQALVLLLLYMAGVEAARFGMADTPVHQPGLHHARA
VGVAHPFLLLLSCSFAAFATLFIRPDLNFVARGMPGEDDSVPIDFIVFSTLPKLVVLMCF
VALTIHAFRRRTPWAWASAGLALALAAVAANPVNTARQILLIGLLPLFIHALSRLRHWRW
ALAGLIFGAIAALGPVLNLFSRGSMWGEGLTTFPFSQDFDAMFVVGGILERAPIPDLGWG
RYLLSAFSFFLPRDLKMFPDFDPLGWSAILGNFSQSNLSLPPFTTAYFDFGLMGPLLLGI
AISAVFRLIDRAIDPQRALSGRYLAALVLLSAYVPFMRGPILGWGPFAASGLIAAVIAGA
LSARARRVIRVRRTRTLPPSARHDLPTP