Protein Info for GFF616 in Sphingobium sp. HT1-2

Annotation: Glycosyl transferase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 TIGR04063: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family" amino acids 3 to 398 (396 residues), 646.9 bits, see alignment E=5.7e-199 PF13579: Glyco_trans_4_4" amino acids 17 to 190 (174 residues), 87.6 bits, see alignment E=2.3e-28 PF13439: Glyco_transf_4" amino acids 22 to 195 (174 residues), 76.1 bits, see alignment E=7e-25 PF00534: Glycos_transf_1" amino acids 213 to 363 (151 residues), 100.1 bits, see alignment E=2.1e-32 PF13692: Glyco_trans_1_4" amino acids 216 to 362 (147 residues), 109.1 bits, see alignment E=4.4e-35

Best Hits

KEGG orthology group: None (inferred from 89% identity to sjp:SJA_C1-07480)

Predicted SEED Role

"Glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>GFF616 Glycosyl transferase, group 1 (Sphingobium sp. HT1-2)
MTRILHVLDHSLPMHSGYTFRTRAILRAQLAKGWDVRGLTGRRHIAAGPQEELVDGLHFH
RTPGEAASGNALLREWRDISAHADAIESLVRQWRPDIIHAHSPVLNAMAAQRVARRHGIP
LIYEIRAFWEDAAVGNGTGTEGSPRYWLTRQLETHAVRAADAVAVICEGLRSDLVARGID
SAKITVSPNGVDLDQFGAPVPRDPALTAKLRLEGADVVGFIGSFYDYEGLDDLIAAMPRL
VRARPRAKLLLVGGGPMEQALRDQALASPFTDHIVFVGRVPHDQVEHYYAQVDVLAYPRK
AMRLTDLVTPLKPLEAMAQGRLVAASSVGGHRELIEDGVTGTLFAPDDPAAIAQALAGMF
ADRGFWDERRVVARDFVERERNWSSNILRYEPVYQRLLGRDSTAKAA